Evidence map›Paper›PMID 21572441›Full record

ArticleNature biotechnology2011

Dosage suppression genetic interaction networks enhance functional wiring diagrams of the cell.

Leslie Magtanong, Cheuk Hei Ho, Sarah L Barker, Wei Jiao, Anastasia Baryshnikova, Sondra Bahr, Andrew M Smith, Lawrence E Heisler, John S Choy, Elena Kuzmin and 9 more

Abstract read
In one paragraph

Article in Nature biotechnology, 2011. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 70 papers.

0numbers the graph read from it
0cells of the map it votes in
70citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

70 citing papers in PubMed.

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  15. Diverse yeast antiviral systems prevent lethal pathogenesis caused by the L-A mycovirus.Proceedings of the National Academy of Sciences of the United States of America · 2023
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10 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

19 authors.

Leslie MagtanongDepartment of Molecular Genetics, University of Toronto, Toronto, Ontario, Canada.
Cheuk Hei Ho
Sarah L Barker
Wei Jiao
Anastasia Baryshnikova
Sondra Bahr
Andrew M Smith
Lawrence E Heisler
John S Choy
Elena Kuzmin
Kerry Andrusiak
Anna Kobylianski
Zhijian Li
Michael Costanzo
Munira A Basrai
Guri Giaever
Corey Nislow
Brenda Andrews
Charles Boone

Funding

Molecular Determinants of Chromosome Transmission and Cell Cycle RegulationZIABC010822 · NCI · DIVISION OF BASIC SCIENCES - NCI · PI BASRAI, MUNIRA · 2009 to 2025
$29.2M
Molecular Determinants of Chromosome Transmission and Cell Cycle RegulationZ01BC010822 · NCI · DIVISION OF BASIC SCIENCES - NCI · PI BASRAI, MUNIRA · 2007 to 2008
$1.9M
Characterization of Small Open Reading Frames (sORFs) that Encode for ProteinsZIABC010831 · NCI · DIVISION OF BASIC SCIENCES - NCI · PI BASRAI, MUNIRA · 2009 to 2010
$255k
Molecular Determinants of Faithful Chromosome TransmissiZ01SC010360 · SC · CLINICAL SCIENCES · PI BASRAI, MUNIRA · 2000 to 2006
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CIHR 020380CIHR MOP-57830CIHR MOP-81340CIHR MOP-84305Intramural NIH HHS Z01 BC010822Intramural NIH HHS Z01 SC010360
6 · The paper itself

Abstract

Dosage suppression is a genetic interaction in which overproduction of one gene rescues a mutant phenotype of another gene. Although dosage suppression is known to map functional connections among genes, the extent to which it might illuminate global cellular functions is unclear. Here we analyze a network of interactions linking dosage suppressors to 437 essential genes in yeast. For 424 genes, we curated interactions from the literature. Analyses revealed that many dosage suppression interactions occur between functionally related genes and that the majority do not overlap with other types of genetic or physical interactions. To confirm the generality of these network properties, we experimentally identified dosage suppressors for 29 genes from pooled populations of temperature-sensitive mutant cells transformed with a high-copy molecular-barcoded open reading frame library, MoBY-ORF 2.0. We classified 87% of the 1,640 total interactions into four general types of suppression mechanisms, which provided insight into their relative frequencies. This work suggests that integrating the results of dosage suppression studies with other interaction networks could generate insights into the functional wiring diagram of a cell.

Indexed as

Gene Regulatory NetworksSuppression, GeneticCyclic AMP-Dependent Protein KinasesDecision TreesDown-RegulationGene Expression ProfilingGene Expression Regulation, FungalGene LibraryGenes, EssentialGenes, FungalHigh-Throughput Nucleotide SequencingKinetochoresMutationOpen Reading FramesPhenotypeProtein Interaction MappingCyclic AMP-Dependent Protein Kinases

Identifiers

PMID21572441
PMCPMC7386433

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.