Evidence map›Paper›PMID 21566194›Full record

ArticleScience (New York, N.Y.)2011

Role for piRNAs and noncoding RNA in de novo DNA methylation of the imprinted mouse Rasgrf1 locus.

Toshiaki Watanabe, Shin-ichi Tomizawa, Kohzoh Mitsuya, Yasushi Totoki, Yasuhiro Yamamoto, Satomi Kuramochi-Miyagawa, Naoko Iida, Yuko Hoki, Patrick J Murphy, Atsushi Toyoda and 11 more

Open access · greenAbstract read
In one paragraph

Article in Science (New York, N.Y.), 2011. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 220 papers.

0numbers the graph read from it
0cells of the map it votes in
220citing papers in PubMed
28.4field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

220 citing papers in PubMed, 375 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Review
  5. Review
  6. Review
  7. Review
  8. Review
  9. Article
  10. Review
  11. Article
  12. Article
  13. The Roles of tRNA-Derived Fragments in Cancer: Updates and Perspectives.International journal of molecular sciences · 2025
    Review
  14. Article
  15. Review
  16. Review
  17. Article
  18. Article
  19. Dnmt3a1 regulates hippocampus-dependent memory via the downstream target Nrp1.Neuropsychopharmacology : official publication of the American College of Neuropsychopharmacology · 2024
    Article
  20. Article

160 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

21 authors at 4 institutions in 3 countries.

Toshiaki WatanabeDivision of Human Genetics and Department of Integrated Genetics, National Institute of Genetics, Research Organization of Information and Systems, Mishima, Shizuoka, 411-8540, Japan. toshwatatoshiakiwatanabe@gmail.com
Shin-ichi Tomizawa
Kohzoh Mitsuya
Yasushi Totoki
Yasuhiro Yamamoto
Satomi Kuramochi-Miyagawa
Naoko Iida
Yuko Hoki
Patrick J Murphy
Atsushi Toyoda
Kengo Gotoh
Hitoshi Hiura
Takahiro Arima
Asao Fujiyama
Takashi Sado
Tatsuhiro Shibata
Toru Nakano
Haifan Lin
Kenji Ichiyanagi
Paul D Soloway
Hiroyuki Sasaki
Kyushu University · JPTohoku University · JPYale University · USBabraham Institute · GB

Funding

Epigenetic Control of a Ras ActivatorR01CA098597 · NCI · CORNELL UNIVERSITY ITHACA · PI SOLOWAY, PAUL D · 2003 to 2011
$2.9M
NCI NIH HHS R01 CA098597
6 · The paper itself

Abstract

Genomic imprinting causes parental origin-specific monoallelic gene expression through differential DNA methylation established in the parental germ line. However, the mechanisms underlying how specific sequences are selectively methylated are not fully understood. We have found that the components of the PIWI-interacting RNA (piRNA) pathway are required for de novo methylation of the differentially methylated region (DMR) of the imprinted mouse Rasgrf1 locus, but not other paternally imprinted loci. A retrotransposon sequence within a noncoding RNA spanning the DMR was targeted by piRNAs generated from a different locus. A direct repeat in the DMR, which is required for the methylation and imprinting of Rasgrf1, served as a promoter for this RNA. We propose a model in which piRNAs and a target RNA direct the sequence-specific methylation of Rasgrf1.

Indexed as

DNA MethylationGenomic ImprintingAnimalsArgonaute ProteinsMaleMiceMice, Inbred C57BLMitochondrial ProteinsModels, GeneticMutationPhospholipase DProteinsras-GRF1Repetitive Sequences, Nucleic AcidRetroelementsRNA, Small InterferingArgonaute ProteinsMitochondrial ProteinsmitoPLD protein, mousePhospholipase DPiwil1 protein, mousePiwil2 protein, mouseProteinsras-GRF1Rasgrf1 protein, mouseRetroelementsRNA, Small InterferingRNA, Untranslated

Identifiers

PMID21566194
PMCPMC3368507
OpenAlexW2117418172

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.