Evidence map›Paper›PMID 21566144›Full record

ArticleThe Journal of biological chemistry2011

The functions of TFIIF during initiation and transcript elongation are differentially affected by phosphorylation by casein kinase 2.

Andrea Újvári, Mahadeb Pal, Donal S Luse

Open access · hybridAbstract read
In one paragraph

Article in The Journal of biological chemistry, 2011. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 14 papers.

0numbers the graph read from it
0cells of the map it votes in
14citing papers in PubMed
1.5field-weighted citation impact, top 19% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

14 citing papers in PubMed, 20 citations in OpenAlex.

  1. Review
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  8. Review
  9. Review
  10. Single-molecule studies of RNAPII elongation.Biochimica et biophysica acta · 2013
    Review
  11. Article
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  14. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors at 1 institution in 1 country.

Andrea ÚjváriDepartment of Molecular Genetics, Lerner Research Institute, The Cleveland Clinic, Cleveland, Ohio 44195, USA.
Mahadeb Pal
Donal S Luse
Cleveland Clinic Lerner College of Medicine · US

Funding

CONTROL OF TRANSCRIPTION IN EUKARYOTIC CELLSR01GM029487 · NIGMS · UNIVERSITY OF CINCINNATI · PI LUSE, DONAL · 1985 to 2009
$2.7M
NIGMS NIH HHS GM 29487NIGMS NIH HHS R01 GM029487
6 · The paper itself

Abstract

The RNA polymerase II (pol II) initiation and elongation factor elongation factor TFIIF can be extensively phosphorylated in vivo, although the significance of this modification has not been clear. We now show that phosphorylation of recombinant TFIIF by casein kinase 2 (CK2) reduces or eliminates some of the functions of TFIIF while paradoxically leaving others intact. Phospho-IIF is fully functional in binding to free pol II and is able to support the initiation of transcription. However, the phosphorylated factor does not bind to stalled elongation complexes as measured in a gel mobility shift assay. Significantly, phosphorylation strongly reduces (or for some truncated versions of RAP74, eliminates) stimulation of transcript elongation by TFIIF. Thus, although TFIIF must participate at the initiation of transcription, its ability to continue its association with pol II and stimulate transcript elongation can be specifically regulated by CK2. This is particularly interesting because CK2 is required for initiation at a subset of pol II promoters. Modulation of TFIIF function could be important in controlling promoter-proximal pausing by pol II during the early stage of transcript elongation.

Indexed as

Casein Kinase IIHeLa CellsHumansPhosphorylationPromoter Regions, GeneticRNA Polymerase IITranscription Factors, TFIITranscription, GeneticCasein Kinase IIRNA Polymerase IITranscription Factors, TFIItranscription factor TFIIF

Identifiers

PMID21566144
PMCPMC3123083
OpenAlexW1994330689

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.