Evidence map›Paper›PMID 21566081›Full record

ArticleMolecular endocrinology (Baltimore, Md.)2011

Ligand-dependent regulation of the activity of the orphan nuclear receptor, small heterodimer partner (SHP), in the repression of bile acid biosynthetic CYP7A1 and CYP8B1 genes.

Ji Miao, Sung-E Choi, Sun Mi Seok, Linda Yang, William J Zuercher, Yong Xu, Timothy M Willson, H Eric Xu, Jongsook Kim Kemper

Open access · bronzeAbstract read
In one paragraph

Article in Molecular endocrinology (Baltimore, Md.), 2011. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 26 papers.

0numbers the graph read from it
0cells of the map it votes in
26citing papers in PubMed
2.1field-weighted citation impact, top 12% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

26 citing papers in PubMed, 44 citations in OpenAlex.

  1. Review
  2. Article
  3. Article
  4. Article
  5. iScience · 2023
    Article
  6. Review
  7. FXR Friend-ChIPs in the Enterohepatic System.Seminars in liver disease · 2023
    Review
  8. Review
  9. Review
  10. Article
  11. Article
  12. Article
  13. Article
  14. Article
  15. Article
  16. Article
  17. Review
  18. Structural insights into gene repression by the orphan nuclear receptor SHP.Proceedings of the National Academy of Sciences of the United States of America · 2014
    Article
  19. The orphan nuclear receptors at their 25-year reunion.Journal of molecular endocrinology · 2013
    Review
  20. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 3 institutions in 1 country.

Ji MiaoDepartment of Molecular and Integrative Physiology, University of Illinois, Urbana-Champaign, Urbana, Illinois 61801, USA.
Sung-E Choi
Sun Mi Seok
Linda Yang
William J Zuercher
Yong Xu
Timothy M Willson
H Eric Xu
Jongsook Kim Kemper
University of Illinois Urbana-Champaign · USResearch Triangle Park Foundation · USVan Andel Institute · US

Funding

Regulation of Cholesterol Catabolism by Bile AcidsR01DK062777 · NIDDK · UNIVERSITY OF ILLINOIS URBANA-CHAMPAIGN · PI KEMPER, JONGSOOK KIM · 2003 to 2021
$5.8M
MOLECULAR REGULATION OF FXR ACTIVITYR01DK080032 · NIDDK · UNIVERSITY OF ILLINOIS AT URBANA-CHAMPAIGN · PI KEMPER, JONGSOOK KIM · 2009 to 2010
$634k
Regulation of cholesterol catabolism by bile acidsR56DK062777 · NIDDK · UNIVERSITY OF ILLINOIS AT URBANA-CHAMPAIGN · PI KEMPER, JONGSOOK KIM · 2008 to 2008
$192k
NIDDK NIH HHS DK062777NIDDK NIH HHS DK080032NIDDK NIH HHS N01-DK-7-0004NIDDK NIH HHS R01 DK062777NIDDK NIH HHS R01 DK080032NIDDK NIH HHS R56 DK062777
6 · The paper itself

Abstract

Small heterodimer partner (SHP) plays important roles in diverse biological processes by directly interacting with transcription factors and inhibiting their activities. SHP has been designated an orphan nuclear receptor, but whether its activity can be modulated by ligands has been a long-standing question. Recently, retinoid-related molecules, including 4-[3-(1-adamantyl)-4-hydroxyphenyl]-3-chlorocinnamic acid (3Cl-AHPC), were shown to bind to SHP and enhance apoptosis. We have examined whether 3Cl-AHPC acts as an agonist and increases SHP activity in the repression of bile acid biosynthetic CYP7A1 and CYP8B1 genes and delineated the underlying mechanisms. Contrary to this expectation, micromolar concentrations of 3Cl-AHPC increased CYP7A1 expression but indirectly via p38 kinase signaling. Nanomolar concentrations, however, repressed CYP7A1 expression and decreased bile acid levels in HepG2 cells, and little repression was observed when SHP was down-regulated by small hairpin RNA. Mechanistic studies revealed that 3Cl-AHPC bound to SHP, increased the interaction of SHP with liver receptor homologue (LRH)-1, a hepatic activator for CYP7A1 and CYP8B1 genes, and with repressive cofactors, Brahma, mammalian Sin3a, and histone deacetylase-1, and, subsequently, increased the occupancy of SHP and these cofactors at the promoters. Mutation of Leu-100, predicted to contact 3Cl-AHPC within the SHP ligand binding pocket by molecular modeling, severely impaired the increased interaction with LRH-1, and repression of LRH-1 activity mediated by 3Cl-AHPC. 3Cl-AHPC repressed SHP metabolic target genes in a gene-specific manner in human primary hepatocytes and HepG2 cells. These data suggest that SHP may act as a ligand-regulated receptor in metabolic pathways. Modulation of SHP activity by synthetic ligands may be a useful therapeutic strategy.

Indexed as

AdamantaneAmino Acid MotifsAnimalsBile Acids and SaltsBinding SitesCell LineCholesterol 7-alpha-HydroxylaseChromatin ImmunoprecipitationCinnamatesGenes, ReporterHistone Deacetylase 1HumansLeucineLuciferases, FireflyMiceModels, Molecular4-(3-(1-adamantyl)-4-hydroxyphenyl)-3-chlorocinnamic acidAdamantaneBile Acids and SaltsCholesterol 7-alpha-HydroxylaseCinnamatesCyp7a1 protein, mouseHdac1 protein, mouseHistone Deacetylase 1LeucineLuciferases, FireflyNr5a2 protein, mousenuclear receptor subfamily 0, group B, member 2Receptors, Cytoplasmic and NuclearSmarca2 protein, mouseSteroid 12-alpha-HydroxylaseTranscription Factors

Identifiers

PMID21566081
PMCPMC3125094
OpenAlexW2056427946

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.