Evidence map›Paper›PMID 21565703›Full record

ArticleStructure (London, England : 1993)2011

Structural analysis of human and macaque mAbs 2909 and 2.5B: implications for the configuration of the quaternary neutralizing epitope of HIV-1 gp120.

Brett Spurrier, Jared M Sampson, Maxim Totrov, Huiguang Li, Timothy O'Neal, Constance Williams, James Robinson, Miroslaw K Gorny, Susan Zolla-Pazner, Xiang-Peng Kong

Open access · bronzeAbstract read
In one paragraph

Article in Structure (London, England : 1993), 2011. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 19 papers.

0numbers the graph read from it
0cells of the map it votes in
19citing papers in PubMed
1.7field-weighted citation impact, top 18% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

19 citing papers in PubMed, 26 citations in OpenAlex.

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  17. Identification of human neutralizing antibodies that bind to complex epitopes on dengue virions.Proceedings of the National Academy of Sciences of the United States of America · 2012
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 4 institutions in 1 country.

Brett SpurrierDepartment of Biochemistry, NYU School of Medicine, New York, NY 10016, USA.
Jared M Sampson
Maxim Totrov
Huiguang Li
Timothy O'Neal
Constance Williams
James Robinson
Miroslaw K Gorny
Susan Zolla-Pazner
Xiang-Peng Kong
New York University · USMolsoft (United States) · USUniversity Medical Center New Orleans · USVA NY Harbor Healthcare System · US

Funding

VIROLOGY COREP30AI027742 · NIAID · NEW YORK UNIVERSITY SCHOOL OF MEDICINE · PI ZOLLA-PAZNER, SUSAN B · 1989 to 2010
$19.4M
Variation in HIV-1 R5 Envs: Consequences for tropism, neutralization & vaccinesP01AI082274 · NIAID · UNIV OF MASSACHUSETTS MED SCH WORCESTER · PI HU, SHIU · 2009 to 2013
$9.7M
PROTECTIVE HUMAN MONOCLONAL ANTIBODIES TO HIV1R01HL059725 · NHLBI · NEW YORK UNIVERSITY SCHOOL OF MEDICINE · PI ZOLLA-PAZNER, SUSAN B · 1997 to 2014
$8.8M
IMMUNOLOGIC RELATEDNESS AMONG AND BETWEEN HIV-1 SUBTYPESR01AI036085 · NIAID · NEW YORK UNIVERSITY SCHOOL OF MEDICINE · PI ZOLLA-PAZNER, SUSAN B · 1994 to 2008
$5.3M
Structure-Based Characterization of gp120 Non-V3 Variable Loop EpitopesR01AI084119 · NIAID · NEW YORK UNIVERSITY SCHOOL OF MEDICINE · PI CARDOZO, TIMOTHY J, KONG, XIANGPENG · 2009 to 2014
$3.2M
Training program in Molecular BiophysicsT32GM088118 · NIGMS · NEW YORK UNIVERSITY SCHOOL OF MEDICINE · PI STOKES, DAVID L. · 2010 to 2019
$1.8M
The Immunoglobulin Gene Usage for Anti-V3 Monoclonal AntibodiesR21AI077451 · NIAID · NEW YORK UNIVERSITY SCHOOL OF MEDICINE · PI GORNY, MIROSLAW K · 2008 to 2010
$637k
NHLBI NIH HHS HL059725NHLBI NIH HHS R01 HL059725NIAID NIH HHS AI027742NIAID NIH HHS AI036085NIAID NIH HHS AI077451NIAID NIH HHS AI082274NIAID NIH HHS AI084119NIAID NIH HHS P01 AI082274NIAID NIH HHS P30 AI027742NIAID NIH HHS R01 AI036085NIAID NIH HHS R01 AI084119NIAID NIH HHS R21 AI077451NIGMS NIH HHS GM088118NIGMS NIH HHS T32 GM088118
6 · The paper itself

Abstract

The quaternary neutralizing epitope (QNE) of HIV-1 gp120 is preferentially expressed on the trimeric envelope spikes of intact HIV virions, and QNE-specific monoclonal antibodies (mAbs) potently neutralize HIV-1. Here, we present the crystal structures of the Fabs of human mAb 2909 and macaque mAb 2.5B. Both mAbs have long beta hairpin CDR H3 regions >20 Å in length that are each situated at the center of their respective antigen-binding sites. Computational analysis showed that the paratopes include the whole CDR H3, while additional CDR residues form shallow binding pockets. Structural modeling suggests a way to understand the configuration of QNEs and the antigen-antibody interaction for QNE mAbs. Our data will be useful in designing immunogens that may elicit potent neutralizing QNE Abs.

Indexed as

Antigens, ViralHIV Envelope Protein gp120Amino Acid SequenceAnimalsAntibodies, MonoclonalAntibodies, NeutralizingCrystallography, X-RayEpitopesHIV-1HIV AntibodiesHIV InfectionsHumansMacacaModels, MolecularMolecular Sequence DataProtein BindingAntibodies, MonoclonalAntibodies, NeutralizingAntigens, ViralEpitopesHIV AntibodiesHIV Envelope Protein gp120

Identifiers

PMID21565703
PMCPMC3096878
OpenAlexW2064508445

What OpenQuestion holds

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Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.