ArticleThe ISME journal2011
Metabolic diversity among main microorganisms inside an arsenic-rich ecosystem revealed by meta- and proteo-genomics.
Article in The ISME journal, 2011. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 68 papers.
What it found
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The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.
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Who cites it
68 citing papers in PubMed, 165 citations in OpenAlex.
- The key to arsenic pollution remediation: engineering and functional effects of arsenic-resistant microorganisms.World journal of microbiology & biotechnology · 2026Review
- Systematic evaluation of protein extraction for metaproteomic analysis of marine sediment with high clay content.ISME communications · 2025Article
- Quorum sensing in biofilm-mediated heavy metal resistance and transformation: environmental perspectives and bioremediation.Frontiers in microbiology · 2025Review
- Omics technology draws a comprehensive heavy metal resistance strategy in bacteria.World journal of microbiology & biotechnology · 2024Review
- Synergistic Impacts of Arsenic and Antimony Co-contamination on Diazotrophic Communities.Microbial ecology · 2022Article
- Alkaline extract from vermicompost reduced the stress promoted by As on maize plants and increase their phytoextraction capacity.Environmental science and pollution research international · 2022Article
- Metagenomic Mining for Esterases in the Microbial Community of Los Rueldos Acid Mine Drainage Formation.Frontiers in microbiology · 2022Article
- Recent progress in the application of omics technologies in the study of bio-mining microorganisms from extreme environments.Microbial cell factories · 2021Review
- Effects ofFrontiers in microbiology · 2021Article
- Trace Metal Contamination Impacts Predicted Functions More Than Structure of Marine Prokaryotic Biofilm Communities in an Anthropized Coastal Area.Frontiers in microbiology · 2021Article
- Toxic trace element resistance genes and systems identified using the shotgun metagenomics approach in an Iranian mine soil.Environmental science and pollution research international · 2021Article
- Oxalobacter formigenes produces metabolites and lipids undetectable in oxalotrophic Bifidobacterium animalis.Metabolomics : Official journal of the Metabolomic Society · 2020Article
- Effect of arsenite and growth in biofilm conditions on the evolution ofMicrobial genomics · 2020Article
- Acid Mine Drainage as Habitats for Distinct Microbiomes: Current Knowledge in the Era of Molecular and Omic Technologies.Current microbiology · 2020Review
- Biotic and Abiotic Factors Influencing Arsenic Biogeochemistry and Toxicity in Fluvial Ecosystems: A Review.International journal of environmental research and public health · 2020Review
- Alternative Strategies for Microbial Remediation of Pollutants via Synthetic Biology.Frontiers in microbiology · 2020Review
- Characterization of an acid rock drainage microbiome and transcriptome at the Ely Copper Mine Superfund site.PloS one · 2020Article
- Rhizosphere Metagenomics ofMicroorganisms · 2019Article
- Insights into ecological role of a new deltaproteobacterial order Candidatus Acidulodesulfobacterales by metagenomics and metatranscriptomics.The ISME journal · 2019Article
- Evolutionary Implications of Anoxygenic Phototrophy in the Bacterial PhylumFrontiers in microbiology · 2019Article
8 more citing papers are in PubMed but not listed here.
Corrections and comments
PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.
Authors and funding
28 authors at 6 institutions in 1 country.
Funding
No grant is acknowledged in the PubMed record.
Abstract
By their metabolic activities, microorganisms have a crucial role in the biogeochemical cycles of elements. The complete understanding of these processes requires, however, the deciphering of both the structure and the function, including synecologic interactions, of microbial communities. Using a metagenomic approach, we demonstrated here that an acid mine drainage highly contaminated with arsenic is dominated by seven bacterial strains whose genomes were reconstructed. Five of them represent yet uncultivated bacteria and include two strains belonging to a novel bacterial phylum present in some similar ecosystems, and which was named 'Candidatus Fodinabacter communificans.' Metaproteomic data unravelled several microbial capabilities expressed in situ, such as iron, sulfur and arsenic oxidation that are key mechanisms in biomineralization, or organic nutrient, amino acid and vitamin metabolism involved in synthrophic associations. A statistical analysis of genomic and proteomic data and reverse transcriptase-PCR experiments allowed us to build an integrated model of the metabolic interactions that may be of prime importance in the natural attenuation of such anthropized ecosystems.
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Registered trials
Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.