Evidence map›Paper›PMID 21562592›Full record

ArticleGene therapy2012

CTF/NF1 transcription factors act as potent genetic insulators for integrating gene transfer vectors.

A Gaussin, U Modlich, C Bauche, N J Niederländer, A Schambach, C Duros, A Artus, C Baum, O Cohen-Haguenauer, N Mermod

Abstract readComparative Study
PubMed Publisher
In one paragraph

Article in Gene therapy, 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 18 papers.

0numbers the graph read from it
0cells of the map it votes in
18citing papers in PubMed
2.4field-weighted citation impact, top 11% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

18 citing papers in PubMed, 32 citations in OpenAlex.

  1. Article
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  4. Review
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  6. Review
  7. Article
  8. Article
  9. Article
  10. Article
  11. Insulated Foamy Viral Vectors.Human gene therapy · 2016
    Article
  12. Charting a clear path: the ASGCT Standardized Pathways Conference.Molecular therapy : the journal of the American Society of Gene Therapy · 2014
    Article
  13. Review
  14. Article
  15. Article
  16. Article
  17. Article
  18. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 2 institutions in 3 countries.

A GaussinInstitute of Biotechnology, University of Lausanne, Lausanne, Switzerland.
U Modlich
C Bauche
N J Niederländer
A Schambach
C Duros
A Artus
C Baum
O Cohen-Haguenauer
N Mermod
Medizinische Hochschule Hannover · DEUniversity of Lausanne · CH

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Gene transfer-based therapeutic approaches have greatly benefited from the ability of some viral vectors to efficiently integrate within the cell genome and ensure persistent transmission of newly acquired transgenes to the target cell progeny. However, integration of provirus has been associated with epigenetic repercussions that may influence the expression of both the transgene and cellular genes close to vector integration loci. The exploitation of genetic insulator elements may overcome both issues through their ability to act as barriers that limit transgene silencing and/or as enhancer-blockers preventing the activation of endogenous genes by the vector enhancer. We established quantitative plasmid-based assay systems to screen enhancer-blocker and barrier genetic elements. Short synthetic insulators that bind to nuclear factor-I protein family transcription factors were identified to exert both enhancer-blocker and barrier functions, and were compared to binding sites for the insulator protein CTCF (CCCTC-binding factor). Gamma-retroviral vectors enclosing these insulator elements were produced at titers similar to their non-insulated counterparts and proved to be less genotoxic in an in vitro immortalization assay, yielding lower activation of Evi1 oncogene expression and reduced clonal expansion of bone marrow cells.

Indexed as

Gene Transfer TechniquesInsulator ElementsAnimalsBinding SitesBone Marrow CellsCCCTC-Binding FactorDNA-Binding ProteinsEnhancer Elements, GeneticFriend murine leukemia virusGene SilencingGenetic VectorsHeLa CellsHumansMDS1 and EVI1 Complex Locus ProteinMiceMice, Inbred C57BLCCCTC-Binding FactorCTCF protein, humanCtcf protein, mouseCTF-1 transcription factorDNA-Binding ProteinsMDS1 and EVI1 Complex Locus ProteinMecom protein, mouseNFI Transcription FactorsRepressor ProteinsRNA, Small InterferingTranscription Factors

Identifiers

PMID21562592
OpenAlexW2094182204

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.