Evidence map›Paper›PMID 21562494›Full record

ArticleNature2011

Structure and function of a membrane component SecDF that enhances protein export.

Tomoya Tsukazaki, Hiroyuki Mori, Yuka Echizen, Ryuichiro Ishitani, Shuya Fukai, Takeshi Tanaka, Anna Perederina, Dmitry G Vassylyev, Toshiyuki Kohno, Andrés D Maturana and 2 more

Open access · greenAbstract read
In one paragraph

Article in Nature, 2011. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 130 papers.

0numbers the graph read from it
0cells of the map it votes in
130citing papers in PubMed
12.6field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

130 citing papers in PubMed, 224 citations in OpenAlex.

  1. Review
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  3. Article
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  7. Article
  8. Journal of oral microbiology · 2025
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  11. Review
  12. Review
  13. Article
  14. Genome-wide CRISPRi screen identifies enhanced autolithotrophic phenotypes in acetogenic bacteriumProceedings of the National Academy of Sciences of the United States of America · 2023
    Article
  15. Cracking outer membrane biogenesis.Biochimica et biophysica acta. Molecular cell research · 2023
    Article
  16. Review
  17. Review
  18. Review
  19. Article
  20. The biogenesis of β-lactamase enzymes.Microbiology (Reading, England) · 2022
    Review

70 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors at 6 institutions in 2 countries.

Tomoya TsukazakiDepartment of Biophysics and Biochemistry, Graduate School of Science, The University of Tokyo, Bunkyo-ku, Tokyo 113-0032, Japan.
Hiroyuki Mori
Yuka Echizen
Ryuichiro Ishitani
Shuya Fukai
Takeshi Tanaka
Anna Perederina
Dmitry G Vassylyev
Toshiyuki Kohno
Andrés D Maturana
Koreaki Ito
Osamu Nureki
The University of Tokyo · JPMitsubishi Group (Japan) · JPUniversity of Alabama at Birmingham · USKyoto Sangyo University · JPKyoto University · JPNagaoka University of Technology · JP

Funding

Transcription Regulation Through RNAP Secondary ChannelR01GM074840 · NIGMS · UNIVERSITY OF ALABAMA AT BIRMINGHAM · PI VASSYLYEV, DMITRY G · 2005 to 2013
$4.1M
NIGMS NIH HHS R01 GM074840
6 · The paper itself

Abstract

Protein translocation across the bacterial membrane, mediated by the secretory translocon SecYEG and the SecA ATPase, is enhanced by proton motive force and membrane-integrated SecDF, which associates with SecYEG. The role of SecDF has remained unclear, although it is proposed to function in later stages of translocation as well as in membrane protein biogenesis. Here, we determined the crystal structure of Thermus thermophilus SecDF at 3.3 Å resolution, revealing a pseudo-symmetrical, 12-helix transmembrane domain belonging to the RND superfamily and two major periplasmic domains, P1 and P4. Higher-resolution analysis of the periplasmic domains suggested that P1, which binds an unfolded protein, undergoes functionally important conformational changes. In vitro analyses identified an ATP-independent step of protein translocation that requires both SecDF and proton motive force. Electrophysiological analyses revealed that SecDF conducts protons in a manner dependent on pH and the presence of an unfolded protein, with conserved Asp and Arg residues at the transmembrane interface between SecD and SecF playing essential roles in the movements of protons and preproteins. Therefore, we propose that SecDF functions as a membrane-integrated chaperone, powered by proton motive force, to achieve ATP-independent protein translocation.

Indexed as

Adenosine TriphosphateArginineAsparagineBacterial ProteinsCrystallography, X-RayHydrogen-Ion ConcentrationMembrane ProteinsMembrane Transport ProteinsModels, BiologicalModels, MolecularNuclear Magnetic Resonance, BiomolecularPeriplasmProtein Structure, TertiaryProtein TransportProtein UnfoldingProton-Motive ForceAdenosine TriphosphateArginineAsparagineBacterial ProteinsMembrane ProteinsMembrane Transport ProteinssecD protein, BacteriasecF protein, Bacteria

Identifiers

PMID21562494
PMCPMC3697915
OpenAlexW2132192325

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.