Evidence map›Paper›PMID 21562107›Full record

ArticleJournal of clinical microbiology2011

Development of a new chlamydiales-specific real-time PCR and its application to respiratory clinical samples.

Julia Lienard, Antony Croxatto, Sebastien Aeby, Katia Jaton, Klara Posfay-Barbe, Alain Gervaix, Gilbert Greub

Abstract readValidation Study
In one paragraph

Article in Journal of clinical microbiology, 2011. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 49 papers.

0numbers the graph read from it
0cells of the map it votes in
49citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

49 citing papers in PubMed.

  1. Article
  2. International journal of systematic and evolutionary microbiology · 2025
    Article
  3. Article
  4. Molecular detection of Chlamydiales organisms in ruminant abortions in Brazil.Brazilian journal of microbiology : [publication of the Brazilian Society for Microbiology] · 2025
    Article
  5. The Occurrence ofPathogens (Basel, Switzerland) · 2024
    Article
  6. mBio · 2024
    Article
  7. Article
  8. Article
  9. Article
  10. Article
  11. Article
  12. A Case Study of ZoonoticOpen forum infectious diseases · 2022
    Article
  13. Article
  14. Evaluation of a Multiplex Real-Time PCR Assay for DetectingDiagnostics (Basel, Switzerland) · 2022
    Article
  15. Article
  16. Article
  17. Nested Species Distribution Models ofApplied and environmental microbiology · 2020
    Article
  18. Molecular causes of an evolutionary shift along the parasitism-mutualism continuum in a bacterial symbiont.Proceedings of the National Academy of Sciences of the United States of America · 2020
    Article
  19. Article
  20. Isolation of Tetracycline-ResistantAntibiotics (Basel, Switzerland) · 2020
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors.

Julia LienardInstitute of Microbiology, University Hospital Center and University of Lausanne, Lausanne, Switzerland.
Antony Croxatto
Sebastien Aeby
Katia Jaton
Klara Posfay-Barbe
Alain Gervaix
Gilbert Greub

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Originally composed of the single family Chlamydiaceae, the Chlamydiales order has extended considerably over the last several decades. Chlamydia-related bacteria were added and classified into six different families and family-level lineages: the Criblamydiaceae, Parachlamydiaceae, Piscichlamydiaceae, Rhabdochlamydiaceae, Simkaniaceae, and Waddliaceae. While several members of the Chlamydiaceae family are known pathogens, recent studies showed diverse associations of Chlamydia-related bacteria with human and animal infections. Some of these latter bacteria might be of medical importance since, given their ability to replicate in free-living amoebae, they may also replicate efficiently in other phagocytic cells, including cells of the innate immune system. Thus, a new Chlamydiales-specific real-time PCR targeting the conserved 16S rRNA gene was developed. This new molecular tool can detect at least five DNA copies and show very high specificity without cross-amplification from other bacterial clade DNA. The new PCR was validated with 128 clinical samples positive or negative for Chlamydia trachomatis or C. pneumoniae. Of 65 positive samples, 61 (93.8%) were found to be positive with the new PCR. The four discordant samples, retested with the original test, were determined to be negative or below detection limits. Then, the new PCR was applied to 422 nasopharyngeal swabs taken from children with or without pneumonia; a total of 48 (11.4%) samples were determined to be positive, and 45 of these were successfully sequenced. The majority of the sequences corresponded to Chlamydia-related bacteria and especially to members of the Parachlamydiaceae family.

Indexed as

AdolescentBacteriological TechniquesChildChild, PreschoolChlamydialesCluster AnalysisDNA, BacterialDNA PrimersDNA, RibosomalGram-Negative Bacterial InfectionsHumansInfantMolecular Sequence DataPhylogenyPolymerase Chain ReactionRespiratory Tract InfectionsDNA, BacterialDNA PrimersDNA, RibosomalRNA, Ribosomal, 16S

Identifiers

PMID21562107
PMCPMC3147821

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.