Evidence map›Paper›PMID 21561873›Full record

ArticleJournal of the American Medical Informatics Association : JAMIA

Translational bioinformatics: linking knowledge across biological and clinical realms.

Indra Neil Sarkar, Atul J Butte, Yves A Lussier, Peter Tarczy-Hornoch, Lucila Ohno-Machado

Open access · hybridAbstract read
In one paragraph

Article in Journal of the American Medical Informatics Association : JAMIA. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 32 papers.

0numbers the graph read from it
0cells of the map it votes in
32citing papers in PubMed
4.9field-weighted citation impact, top 4% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

32 citing papers in PubMed, 65 citations in OpenAlex.

  1. Article
  2. Article
  3. Identifying natural health product and dietary supplement information within adverse event reporting systems.Pacific Symposium on Biocomputing. Pacific Symposium on Biocomputing · 2018
    Article
  4. Article
  5. Article
  6. Article
  7. Article
  8. Applications of systems approaches in the study of rheumatic diseases.The Korean journal of internal medicine · 2015
    Review
  9. DisGeNET: a discovery platform for the dynamical exploration of human diseases and their genes.Database : the journal of biological databases and curation · 2015
    Article
  10. Article
  11. Article
  12. Article
  13. Recent trends in biomedical informatics: a study based on JAMIA articles.Journal of the American Medical Informatics Association : JAMIA · 2013
    Article
  14. A survey of informatics approaches to whole-exome and whole-genome clinical reporting in the electronic health record.Genetics in medicine : official journal of the American College of Medical Genetics · 2013
    Article
  15. Article
  16. Article
  17. Translational research in infectious disease: current paradigms and challenges ahead.Translational research : the journal of laboratory and clinical medicine · 2012
    Review
  18. Clinical research informatics: a conceptual perspective.Journal of the American Medical Informatics Association : JAMIA · 2012
    Article
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 5 institutions in 1 country.

Indra Neil SarkarCenter for Clinical and Translational Science, University of Vermont, Burlington, Vermont 05405, USA. neil.sarkar@uvm.edu
Atul J Butte
Yves A Lussier
Peter Tarczy-Hornoch
Lucila Ohno-Machado
Institute of Translational Health Sciences · USStanford University · USUniversity of California, San Diego · USUniversity of Chicago · USUniversity of Vermont · US

Funding

INSTITUTE FOR TRANSLATIONAL HEALTH SCIENCE (UL1): BPCAUL1RR025014 · NCRR · UNIVERSITY OF WASHINGTON · PI DISIS, MARY L. · 2007 to 2011
$51.5M
TRANSLATIONAL RESEARCH UNIVERSITY OF CHICAGO: CLINICAL TRIALSUL1RR024999 · NCRR · UNIVERSITY OF CHICAGO · PI SOLWAY, JULIAN · 2007 to 2011
$25.3M
University of Washington Biomedical Informatics and Data Science Research Training ProgramT15LM007442 · NLM · UNIVERSITY OF WASHINGTON · PI JOHN H. GENNARI, Andrea L. Hartzler · 2002 to 2026
$19.6M
iDASH: Integrating Data for Analysis, Anonymization, and SharingU54HL108460 · NHLBI · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI OHNO-MACHADO, LUCILA · 2010 to 2015
$19.1M
SAN DIEGO CLINICAL AND TRANSLATIONAL RESEARCH INSTITUTEUL1RR031980 · NCRR · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI FIRESTEIN, GARY S · 2010 to 2011
$14.0M
SCANNER: Scalable National Network for Effectiveness ResearchR01HS019913 · AHRQ · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI OHNO-MACHADO, LUCILA · 2010 to 2010
$8.3M
GeneClinics: Clinical Genetic Information ResourceP41LM007242 · NLM · UNIVERSITY OF WASHINGTON · PI PAGON, ROBERTA A · 2001 to 2004
$2.5M
GENESEEK: DATA INTEGRATION SYSTEM FOR GENETIC DATABASESR01HG002288 · NHGRI · UNIVERSITY OF WASHINGTON · PI TARCZY-HORNOCH, PETER · 2000 to 2005
$2.0M
Assessing quality of individual predictions in medical decision support systemsR01LM009520 · NLM · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI OHNO-MACHADO, LUCILA · 2007 to 2010
$1.4M
Integrating Microarray and Proteomic Data by Ontology-based AnnotationR01LM009719 · NLM · STANFORD UNIVERSITY · PI BUTTE, ATUL J · 2008 to 2011
$1.1M
Enhancing Organism Based Disease Knowledge Via Name Based Taxonomic IntelligenceR01LM009725 · NLM · MARINE BIOLOGICAL LABORATORY · PI SARKAR, INDRA N · 2008 to 2010
$1.1M
Semantic Approaches to Phenotypic Databases AnalysesK22LM008308 · NLM · UNIVERSITY OF CHICAGO · PI LUSSIER, YVES A · 2004 to 2006
$468k
AHRQ HHS R01 HS019913AHRQ HHS R01HS019913NCRR NIH HHS UL1 RR024999NCRR NIH HHS UL1RR024999NCRR NIH HHS UL1 RR025014NCRR NIH HHS UL1RR025014NCRR NIH HHS UL1 RR031980NCRR NIH HHS UL1RR031980NHGRI NIH HHS R01 HG002288NHGRI NIH HHS R01HG02288NHLBI NIH HHS U54 HL108460NHLBI NIH HHS U54HL108460NLM NIH HHS K22 LM008308NLM NIH HHS P41LM007242NLM NIH HHS R01 LM009520NLM NIH HHS R01LM009520NLM NIH HHS R01 LM009719NLM NIH HHS R01LM009719NLM NIH HHS R01 LM009725NLM NIH HHS R01LM009725NLM NIH HHS T15 LM007442NLM NIH HHS T15LM07442
6 · The paper itself

Abstract

Nearly a decade since the completion of the first draft of the human genome, the biomedical community is positioned to usher in a new era of scientific inquiry that links fundamental biological insights with clinical knowledge. Accordingly, holistic approaches are needed to develop and assess hypotheses that incorporate genotypic, phenotypic, and environmental knowledge. This perspective presents translational bioinformatics as a discipline that builds on the successes of bioinformatics and health informatics for the study of complex diseases. The early successes of translational bioinformatics are indicative of the potential to achieve the promise of the Human Genome Project for gaining deeper insights to the genetic underpinnings of disease and progress toward the development of a new generation of therapies.

Indexed as

Computational BiologyInterprofessional RelationsMedical InformaticsTranslational Research, BiomedicalHuman Genome ProjectHumans

Identifiers

PMID21561873
PMCPMC3128415
OpenAlexW2107720458

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.