Evidence map›Paper›PMID 21561070›Full record

ArticleJournal of the American Chemical Society2011

Genetic analysis of H1N1 influenza virus from throat swab samples in a microfluidic system for point-of-care diagnostics.

B Scott Ferguson, Steven F Buchsbaum, Ting-Ting Wu, Kuangwen Hsieh, Yi Xiao, Ren Sun, H Tom Soh

Abstract read
In one paragraph

Article in Journal of the American Chemical Society, 2011. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 52 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
52citing papers in PubMed, 1 pooled it
13.7field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

52 citing papers in PubMed, 1 synthesis or guideline pooled it, 189 citations in OpenAlex.

  1. Pooled it
  2. Article
  3. Review
  4. Article
  5. Review
  6. Review
  7. Article
  8. Article
  9. Review
  10. Review
  11. Article
  12. Micro and Nanoscale Technologies for Diagnosis of Viral Infections.Small (Weinheim an der Bergstrasse, Germany) · 2021
    Review
  13. Review
  14. Review
  15. Microfluidic devices for detection of RNA viruses.Reviews in medical virology · 2021
    Review
  16. Review
  17. Review
  18. Article
  19. Article
  20. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 2 institutions in 1 country.

B Scott FergusonDepartment of Mechanical Engineering, University of California, Santa Barbara, Santa Barbara, California 93106, USA.
Steven F Buchsbaum
Ting-Ting Wu
Kuangwen Hsieh
Yi Xiao
Ren Sun
H Tom Soh
University of California, Los Angeles · USUniversity of California, Santa Barbara · US

Funding

Strain Specific Detection of Influenza at the Point-of-CareR01EB009764 · NIBIB · UNIVERSITY OF CALIFORNIA SANTA BARBARA · PI SOH, HYONGSOK TOM · 2009 to 2012
$1.5M
Micromagnetic Aptamer PCR System for Ultrasensitive Multiplexed Protein DetectionR21EB009518 · NIBIB · UNIVERSITY OF CALIFORNIA SANTA BARBARA · PI SOH, HYONGSOK TOM · 2009 to 2010
$328k
NIBIB NIH HHS R01 EB009764NIBIB NIH HHS R21 EB009518
6 · The paper itself

Abstract

The ability to obtain sequence-specific genetic information about rare target organisms directly from complex biological samples at the point-of-care would transform many areas of biotechnology. Microfluidics technology offers compelling tools for integrating multiple biochemical processes in a single device, but despite significant progress, only limited examples have shown specific, genetic analysis of clinical samples within the context of a fully integrated, portable platform. Herein we present the Magnetic Integrated Microfluidic Electrochemical Detector (MIMED) that integrates sample preparation and electrochemical sensors in a monolithic disposable device to detect RNA-based virus directly from throat swab samples. By combining immunomagnetic target capture, concentration, and purification, reverse-transcriptase polymerase chain reaction (RT-PCR) and single-stranded DNA (ssDNA) generation in the sample preparation chamber, as well as sequence-specific electrochemical DNA detection in the electrochemical cell, we demonstrate the detection of influenza H1N1 in throat swab samples at loads as low as 10 TCID(50), 4 orders of magnitude below the clinical titer for this virus. Given the availability of affinity reagents for a broad range of pathogens, our system offers a general approach for multitarget diagnostics at the point-of-care.

Indexed as

Microfluidic Analytical TechniquesPoint-of-Care SystemsSpecimen HandlingDNA, Single-StrandedElectrochemistryInfluenza A Virus, H1N1 SubtypeLimit of DetectionMagneticsPharynxProtein DenaturationReverse Transcriptase Polymerase Chain ReactionRibonucleoproteinsRNA, ViralDNA, Single-StrandedRibonucleoproteinsRNA, Viral

Identifiers

PMID21561070
PMCPMC3110979
OpenAlexW2048522427

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.