Evidence map›Paper›PMID 21560118›Full record

ArticleBiopolymers2011

Transmembrane peptides used to investigate the homo-oligomeric interface and binding hotspot of latent membrane protein 1.

Deanne W Sammond, Catherine Joce, Ryan Takeshita, Sarah E McQuate, Nilanjan Ghosh, Jennifer M Martin, Hang Yin

Open access · greenAbstract read
In one paragraph

Article in Biopolymers, 2011. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 9 papers.

0numbers the graph read from it
0cells of the map it votes in
9citing papers in PubMed
1.3field-weighted citation impact, top 19% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

9 citing papers in PubMed, 19 citations in OpenAlex.

  1. Article
  2. Drugging Membrane Protein Interactions.Annual review of biomedical engineering · 2016
    Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 1 institution in 1 country.

Deanne W SammondDepartment of Chemistry and Biochemistry, University of Colorado, Boulder, CO 80309, USA.
Catherine Joce
Ryan Takeshita
Sarah E McQuate
Nilanjan Ghosh
Jennifer M Martin
Hang Yin
University of Colorado Boulder · US

Funding

TRAINING IN SIGNAL TRANSDUCTION &CELL CYCLE REGULATIONT32GM008759 · NIGMS · UNIVERSITY OF COLORADO AT BOULDER · PI AHN, NATALIE G. · 2000 to 2020
$5.9M
Predoctoral Training Program in Signaling and Cellular Regulation INCLUDE Down Syndrome SupplementT32GM142607 · NIGMS · UNIVERSITY OF COLORADO · PI Sabrina Leigh Spencer, Tin Tin Su · 2021 to 2026
$3.6M
Probing EBV-LMP-1's Transmembrane Activation Domain with Synthetic Peptide AntagoR21CA138373 · NCI · UNIVERSITY OF COLORADO · PI MARTIN, JENNIFER M, YIN, HANG HUBERT · 2009 to 2010
$626k
NCI NIH HHS 1R21CA138373NCI NIH HHS R21 CA138373NIGMS NIH HHS T32 GM008759NIGMS NIH HHS T32 GM142607
6 · The paper itself

Abstract

Epstein-Barr virus (EBV), a human γ-herpesvirus, establishes lifelong infection by targeting the adaptive immune system of the host through memory B cells. Although normally benign, EBV contributes to lymphoid malignancies and lymphoproliferative syndromes in immunocompromised individuals. The viral oncoprotein latent membrane protein 1 (LMP-1) is essential for B lymphocyte immortalization by EBV. The constitutive signaling activity of LMP-1 is dependent on homo-oligomerization of its six-spanning hydrophobic transmembrane domain (TMD). However, the mechanism driving LMP-1 intermolecular interaction is poorly understood. Here, we show that the fifth transmembrane helix (TM5) of LMP-1 strongly self-associates, forming a homotrimeric complex mediated by a polar residue embedded in the membrane, D150. Replacement of this aspartic acid residue with alanine disrupts TM5 self-association in detergent micelles and bacterial cell membranes. A full-length LMP-1 variant harboring the D150A substitution is deficient in NFκB activation, supporting the key role of the fifth transmembrane helix in constitutive activation of signaling by this oncoprotein.

Indexed as

Amino Acid SequenceBase SequenceBinding SitesBiopolymersBlotting, WesternCircular DichroismDNA PrimersElectrophoresis, Polyacrylamide GelMolecular Dynamics SimulationMolecular Sequence DataPeptidesPoint MutationSequence Homology, Amino AcidSignal TransductionUltracentrifugationViral Matrix ProteinsBiopolymersDNA PrimersEBV-associated membrane antigen, Epstein-Barr virusPeptidesViral Matrix Proteins

Identifiers

PMID21560118
PMCPMC3192311
OpenAlexW2064873555

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.