Evidence map›Paper›PMID 21560115›Full record

ArticleArthritis and rheumatism2011

Genome-wide and species-wide dissection of the genetics of arthritis severity in heterogeneous stock mice.

Alyssa K Johnsen, William Valdar, Louis Golden, Adriana Ortiz-Lopez, Robert Hitzemann, Jonathan Flint, Diane Mathis, Christophe Benoist

Open access · greenAbstract read
In one paragraph

Article in Arthritis and rheumatism, 2011. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 16 papers.

0numbers the graph read from it
0cells of the map it votes in
16citing papers in PubMed
2.4field-weighted citation impact, top 11% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

16 citing papers in PubMed, 26 citations in OpenAlex.

  1. Article
  2. Article
  3. Genes · 2021
    Article
  4. Article
  5. Article
  6. Heterogeneous Stock Populations for Analysis of Complex Traits.Methods in molecular biology (Clifton, N.J.) · 2017
    Article
  7. Article
  8. Review
  9. Article
  10. Article
  11. Article
  12. Article
  13. After GWAS: mice to the rescue?Current opinion in immunology · 2012
    Review
  14. Article
  15. Review
  16. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 3 institutions in 2 countries.

Alyssa K JohnsenJoslin Diabetes Center and Brigham and Women's Hospital, and Harvard Medical School, Boston, Massachusetts 02115, USA.
William Valdar
Louis Golden
Adriana Ortiz-Lopez
Robert Hitzemann
Jonathan Flint
Diane Mathis
Christophe Benoist
Harvard University Press · USOregon Health & Science University · USUniversity of Oxford · GB

Funding

Genetics of arthritis suscuptibility in outbred HS miceR01AR055271 · NIAMS · JOSLIN DIABETES CENTER · PI BENOIST, CHRISTOPHE O. · 2007 to 2011
$1.8M
Genetic Control of IL-1 and its Role in Inflammatory ArthritisK08AI072044 · NIAID · UNIVERSITY OF PENNSYLVANIA · PI JOHNSEN, ALYSSA K. · 2007 to 2010
$520k
Medical Research Council G0701612NIAID NIH HHS K08 AI072044NIAID NIH HHS K08-AI0-72044-01A1NIAMS NIH HHS R01 AR055271NIAMS NIH HHS R01-AR-055271Wellcome Trust 079912Wellcome Trust 090532
6 · The paper itself

Abstract

objectiveSusceptibility to inflammatory arthritis is determined by a complex set of environmental and genetic factors, but only a portion of the genetic effect can be explained. Conventional genome-wide screens of arthritis models using crosses between inbred mice have been hampered by the low resolution of results and by the restricted range of natural genetic variation sampled. The aim of this study was to address these limitations by performing a genome-wide screen for determinants of arthritis severity using a genetically heterogeneous cohort of mice.

methodsHeterogeneous stock (HS) mice derive from 8 founder inbred strains by serial intercrossing (n>60), resulting in fine-grained genetic variation. With a cohort of 570 HS mice, we performed a genome-wide screen for determinants of arthritis severity in the K/BxN serum-transfer model.

resultsWe mapped regions on chromosomes 1, 2, 4, 6, 7, and 15 that contain quantitative trait loci influencing arthritis severity at a resolution of a few megabases. In several instances, these regions proved to contain 2 quantitative trait loci: the region on chromosome 2 included the C5 fraction of complement known to be required for K/BxN serum-transfer arthritis but also contained a second adjacent quantitative trait locus, for which an intriguing candidate is Ptgs1 (Cox1). Interesting candidates on chromosome 4 included the Padi family, encoding the peptidyl arginine deiminases responsible for citrulline protein modification; suggestively, Padi2 and Padi4 RNA expression was correlated with arthritis severity in HS mice.

conclusionThese results provide a broad overview of the genetic variation that controls the severity of K/BxN serum-transfer arthritis and suggest intriguing candidate genes for further study.

Indexed as

Genetic Predisposition to DiseaseAnimalsArthritis, ExperimentalArthritis, RheumatoidChromosome MappingCrosses, GeneticGenetic VariationGenomeGenome-Wide Association StudyMiceQuantitative Trait LociSeverity of Illness Index

Identifiers

PMID21560115
PMCPMC3371645
OpenAlexW1976870430

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.