Evidence map›Paper›PMID 21556056›Full record

ArticleNature communications2011

Parallel evolution of the make-accumulate-consume strategy in Saccharomyces and Dekkera yeasts.

Elzbieta Rozpędowska, Linda Hellborg, Olena P Ishchuk, Furkan Orhan, Silvia Galafassi, Annamaria Merico, Megan Woolfit, Concetta Compagno, Jure Piskur

Open access · hybridAbstract read
In one paragraph

Article in Nature communications, 2011. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 73 papers.

0numbers the graph read from it
0cells of the map it votes in
73citing papers in PubMed
5.5field-weighted citation impact, top 3% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

73 citing papers in PubMed, 189 citations in OpenAlex.

  1. Article
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  7. The Warburg Effect is the result of faster ATP production by glycolysis than respiration.Proceedings of the National Academy of Sciences of the United States of America · 2024
    Article
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  11. Review
  12. Article
  13. Article
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  16. Review
  17. Article
  18. Article
  19. Mitochondrial Genome Diversity across the Subphylum Saccharomycotina.bioRxiv : the preprint server for biology · 2023
    Article
  20. TheFEMS microbes · 2023
    Article

13 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 3 institutions in 4 countries.

Elzbieta RozpędowskaDepartment of Biology, Lund University, Sölvegatan 35, 223 62 Lund, Sweden.
Linda Hellborg
Olena P Ishchuk
Furkan Orhan
Silvia Galafassi
Annamaria Merico
Megan Woolfit
Concetta Compagno
Jure Piskur
Lund University · SEUniversity of Milan · ITUniversity of Queensland · AU

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Saccharomyces yeasts degrade sugars to two-carbon components, in particular ethanol, even in the presence of excess oxygen. This characteristic is called the Crabtree effect and is the background for the 'make-accumulate-consume' life strategy, which in natural habitats helps Saccharomyces yeasts to out-compete other microorganisms. A global promoter rewiring in the Saccharomyces cerevisiae lineage, which occurred around 100 mya, was one of the main molecular events providing the background for evolution of this strategy. Here we show that the Dekkera bruxellensis lineage, which separated from the Saccharomyces yeasts more than 200 mya, also efficiently makes, accumulates and consumes ethanol and acetic acid. Analysis of promoter sequences indicates that both lineages independently underwent a massive loss of a specific cis-regulatory element from dozens of genes associated with respiration, and we show that also in D. bruxellensis this promoter rewiring contributes to the observed Crabtree effect.

Indexed as

Biological EvolutionAcetic AcidAnaerobiosisBase SequenceDekkeraDNA, FungalDNA, MitochondrialEthanolFermentationGlucosePhylogenyPromoter Regions, GeneticRNA, RibosomalSaccharomyces cerevisiaeSequence Analysis, DNAAcetic AcidDNA, FungalDNA, MitochondrialEthanolGlucoseRNA, RibosomalRNA, ribosomal, 26S

Identifiers

PMID21556056
PMCPMC3112538
OpenAlexW2065692717

What OpenQuestion holds

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LicenceCC BY-NC-SA
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.