Evidence map›Paper›PMID 21551455›Full record

ArticleHuman molecular genetics2011

A second independent locus within DMRT1 is associated with testicular germ cell tumor susceptibility.

Peter A Kanetsky, Nandita Mitra, Saran Vardhanabhuti, David J Vaughn, Mingyao Li, Stephanie L Ciosek, Richard Letrero, Kurt D'Andrea, Madhavi Vaddi, David R Doody and 9 more

Open access · bronzeAbstract read
In one paragraph

Article in Human molecular genetics, 2011. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 71 papers, 11 of them syntheses that pooled it.

0numbers the graph read from it
0cells of the map it votes in
71citing papers in PubMed, 11 pooled it
12.0field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

71 citing papers in PubMed, 11 syntheses or guidelines pooled it, 147 citations in OpenAlex.

  1. Pooled it
  2. Association Study between Polymorphisms in DNA Methylation-Related Genes and Testicular Germ Cell Tumor Risk.Cancer epidemiology, biomarkers & prevention : a publication of the American Association for Cancer Research, cosponsored by the American Society of Preventive Oncology · 2022
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  12. Overlapping genetic etiology of pediatric and adult germ cell tumors.Journal of the National Cancer Institute · 2026
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11 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

19 authors at 9 institutions in 3 countries.

Peter A KanetskyDepartment of Biostatistics and Epidemiology, University of Pennsylvania School of Medicine, Philadelphia, PA 19104, USA. pkanetsk@mail.med.upenn.edu
Nandita Mitra
Saran Vardhanabhuti
David J Vaughn
Mingyao Li
Stephanie L Ciosek
Richard Letrero
Kurt D'Andrea
Madhavi Vaddi
David R Doody
Joellen Weaver
Chu Chen
Jacqueline R Starr
Håkon Håkonarson
Daniel J Rader
Andrew K Godwin
Muredach P Reilly
Stephen M Schwartz
Katherine L Nathanson
Medical Genetics Center · DECancer Research And Biostatistics · USFred Hutch Cancer Center · USCardiovascular Institute Hospital · JPUniversity of Pennsylvania · USChildren's Hospital of Philadelphia · USFox Chase Cancer Center · USUniversity of Kansas Medical Center · USUniversity of Washington · US

Funding

UNIVERSITY OF PENNSYLVANIA CAN CTR SUPPORT GRANTP30CA016520 · NCI · UNIVERSITY OF PENNSYLVANIA · PI SHELLEY L BERGER · 1985 to 2026
$222.3M
WORD PROCESSING CENTER--COREP30CA006927 · NCI · RESEARCH INST OF FOX CHASE CAN CTR · PI Margaret von Mehren · 1985 to 2026
$138.8M
MOLECULAR EPIDEMIOLOGY OF TESTICULAR CARCINOMAR01CA085914 · NCI · FRED HUTCHINSON CANCER RESEARCH CENTER · PI SCHWARTZ, STEPHEN M · 2000 to 2009
$8.4M
Inherited genetic variation and predisposition to testicular germ cell tumorR01CA114478 · NCI · UNIVERSITY OF PENNSYLVANIA · PI NATHANSON, KATHERINE L. · 2007 to 2011
$3.1M
Cancer Biostatistics Training GrantT32CA093283 · NCI · UNIVERSITY OF PENNSYLVANIA · PI GIMOTTY, PHYLLIS A. · 2003 to 2012
$1.7M
NCI NIH HHS 5P30CA016520NCI NIH HHS CA093283NCI NIH HHS P30 CA006927NCI NIH HHS P30 CA016520NCI NIH HHS R01 CA085914NCI NIH HHS R01CA085914NCI NIH HHS R01 CA114478NCI NIH HHS R01CA114478NCI NIH HHS T32 CA093283
6 · The paper itself

Abstract

Susceptibility to testicular germ cell tumors (TGCT) has a significant heritable component, and genome-wide association studies (GWASs) have identified association with variants in several genes, including KITLG, SPRY4, BAK1, TERT, DMRT1 and ATF7IP. In our GWAS, we genotyped 349 TGCT cases and 919 controls and replicated top hits in an independent set of 439 cases and 960 controls in an attempt to find novel TGCT susceptibility loci. We identified a second marker (rs7040024) in the doublesex and mab-3-related transcription factor 1 (DMRT1) gene that is independent of the previously described risk allele (rs755383) at this locus. In combined analysis that mutually conditions on both DMRT1 single nucleotide polymorphism markers, TGCT cases had elevated odds of carriage of the rs7040024 major A allele [per-allele odds ratio (OR) = 1.48, 95% confidence interval (CI) 1.23, 1.78; P = 2.52 × 10(-5)] compared with controls, while the association with rs755383 persisted (per allele OR = 1.26, 95% CI 1.08, 1.47, P = 0.0036). In similar analyses, the association of rs7040024 among men with seminomatous tumors did not differ from that among men with non-seminomatous tumors. In combination with KITLG, the strongest TGCT susceptibility locus found to date, men with TGCT had greatly elevated odds (OR = 14.1, 95% CI 5.12, 38.6; P = 2.98 × 10(-7)) of being double homozygotes for the risk (major) alleles at DMRT (rs7040024) and KITLG (rs4474514) when compared with men without TGCT. Our findings continue to corroborate that genes influencing male germ cell development and differentiation have emerged as the major players in inherited TGCT susceptibility.

Indexed as

AdolescentAdultGenome-Wide Association StudyGenotypeHumansMaleNeoplasms, Germ Cell and EmbryonalTesticular NeoplasmsTranscription FactorsYoung AdultDMRT1 proteinTranscription Factors

Identifiers

PMID21551455
PMCPMC3131044
OpenAlexW2164927959

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.