Evidence map›Paper›PMID 21551312›Full record

ArticleJournal of bacteriology2011

Genome Sequence of the ethene- and vinyl chloride-oxidizing actinomycete Nocardioides sp. strain JS614.

Nicholas V Coleman, Neil L Wilson, Kerrie Barry, Thomas S Brettin, David C Bruce, Alex Copeland, Eileen Dalin, John C Detter, Tijana Glavina Del Rio, Lynne A Goodwin and 19 more

Open access · bronzeAbstract read
In one paragraph

Article in Journal of bacteriology, 2011. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 8 papers.

0numbers the graph read from it
0cells of the map it votes in
8citing papers in PubMed
0.5field-weighted citation impact, top 34% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

8 citing papers in PubMed, 17 citations in OpenAlex.

  1. Article
  2. Synthetic Biology Approaches to Hydrocarbon Biosensors: A Review.Frontiers in bioengineering and biotechnology · 2021
    Review
  3. Article
  4. Microbial degradation of chloroethenes: a review.Environmental science and pollution research international · 2017
    Review
  5. Article
  6. Article
  7. Article
  8. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

29 authors at 9 institutions in 2 countries.

Nicholas V ColemanSchool of Molecular Bioscience, University of Sydney, Darlington 2006, Australia. nicholas.coleman@sydney.edu.au
Neil L Wilson
Kerrie Barry
Thomas S Brettin
David C Bruce
Alex Copeland
Eileen Dalin
John C Detter
Tijana Glavina Del Rio
Lynne A Goodwin
Nancy M Hammon
Shunsheng Han
Loren J Hauser
Sanjay Israni
Edwin Kim
Nikolaos Kyrpides
Miriam L Land
Alla Lapidus
Frank W Larimer
Susan Lucas
Sam Pitluck
Paul Richardson
Jeremy Schmutz
Roxanne Tapia
Sue Thompson
Hope N Tice
Jim C Spain
James G Gossett
Timothy E Mattes
Joint Genome Institute · USLos Alamos National Laboratory · USOak Ridge National Laboratory · USUniversity of Sydney · AUCornell University · USGeorgia Institute of Technology · USHudsonAlpha Institute for Biotechnology · USSynthetic Genomics (United States) · USUniversity of Iowa · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Nocardioides sp. strain JS614 grows on ethene and vinyl chloride (VC) as sole carbon and energy sources and is of interest for bioremediation and biocatalysis. Sequencing of the complete genome of JS614 provides insight into the genetic basis of alkene oxidation, supports ongoing research into the physiology and biochemistry of growth on ethene and VC, and provides biomarkers to facilitate detection of VC/ethene oxidizers in the environment. This is the first genome sequence from the genus Nocardioides and the first genome of a VC/ethene-oxidizing bacterium.

Indexed as

Genome, BacterialActinomycetalesDNA, BacterialEthylenesMolecular Sequence DataOxidation-ReductionSequence Analysis, DNAVinyl ChlorideDNA, BacterialethyleneEthylenesVinyl Chloride

Identifiers

PMID21551312
PMCPMC3133255
OpenAlexW2074773398

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.