Evidence map›Paper›PMID 21551246›Full record

ArticleEukaryotic cell2011

SclR, a basic helix-loop-helix transcription factor, regulates hyphal morphology and promotes sclerotial formation in Aspergillus oryzae.

Feng Jie Jin, Tadashi Takahashi, Ken-ichiro Matsushima, Seiichi Hara, Yasutomo Shinohara, Jun-ichi Maruyama, Katsuhiko Kitamoto, Yasuji Koyama

Open access · diamondAbstract read
In one paragraph

Article in Eukaryotic cell, 2011. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 36 papers.

0numbers the graph read from it
0cells of the map it votes in
36citing papers in PubMed
1.9field-weighted citation impact, top 15% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

36 citing papers in PubMed, 80 citations in OpenAlex.

  1. TheJournal of fungi (Basel, Switzerland) · 2026
    Article
  2. Article
  3. Essential Role of theMycobiology · 2025
    Article
  4. Article
  5. Review
  6. Article
  7. Review
  8. Article
  9. Trace copper-mediated asexual developmentFrontiers in microbiology · 2023
    Article
  10. Article
  11. Article
  12. Review
  13. Article
  14. Article
  15. Article
  16. Review
  17. Heteroexpression ofMarine drugs · 2020
    Article
  18. Article
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 2 institutions in 1 country.

Feng Jie JinNoda Institute for Scientific Research, 399 Noda, Noda City, Japan.
Tadashi Takahashi
Ken-ichiro Matsushima
Seiichi Hara
Yasutomo Shinohara
Jun-ichi Maruyama
Katsuhiko Kitamoto
Yasuji Koyama
Noda Institute for Scientific Research · JPThe University of Tokyo · JP

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Most known basic-region helix-loop-helix (bHLH) proteins belong to a superfamily of transcription factors often involved in the control of growth and differentiation. Therefore, inappropriate expression of genes encoding bHLH proteins is frequently associated with developmental dysfunction. In our previously reported study, a novel bHLH protein-encoding gene (AO090011000215) of Aspergillus oryzae was identified. The gene-disrupted strain was found to produce dense conidia, but sparse sclerotia, relative to the parent strain. Here, to further analyze its function, we generated an overexpressing strain using the A. oryzae amyB gene promoter. Genetic overexpression led to a large number of initial hyphal aggregations and then the formation of mature sclerotia; it was therefore designated sclR (sclerotium regulator). At the same time, the sclR-overexpressing strain also displayed both delayed and decreased conidiation. Scanning electron microscopy indicated that the aerial hyphae of the sclR-overexpressing strain were extremely branched and intertwined with each other. In the generation of the SclR-enhanced green fluorescent protein (EGFP) expression strain, the SclR-EGFP protein fusion was conditionally detected in the nuclei. In addition, the loss of sclR function led to rapid protein degradation and cell lysis in dextrin-polypeptone-yeast extract liquid medium. Taken together, these observations indicate that SclR plays an important role in hyphal morphology, asexual conidiospore formation, and the promotion of sclerotial production, even retaining normal cell function, at least in submerged liquid culture.

Indexed as

Aspergillus oryzaeBasic Helix-Loop-Helix ProteinsDNA PrimersFungal ProteinsGene Expression Regulation, FungalGene Knockout TechniquesGreen Fluorescent ProteinsHelix-Loop-Helix MotifsHyphaePolymerase Chain ReactionSpores, FungalBasic Helix-Loop-Helix ProteinsDNA Primersenhanced green fluorescent proteinFungal ProteinsGreen Fluorescent Proteins

Identifiers

PMID21551246
PMCPMC3147411
OpenAlexW2112577738

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.