Evidence map›Paper›PMID 21549342›Full record

ArticleAmerican journal of human genetics2011

Next-generation sequencing identifies mutations of SMPX, which encodes the small muscle protein, X-linked, as a cause of progressive hearing impairment.

Margit Schraders, Stefan A Haas, Nicole J D Weegerink, Jaap Oostrik, Hao Hu, Lies H Hoefsloot, Sriram Kannan, Patrick L M Huygen, Ronald J E Pennings, Ronald J C Admiraal and 3 more

Open access · bronzeAbstract readCase Reports
In one paragraph

Article in American journal of human genetics, 2011. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 50 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
50citing papers in PubMed, 1 pooled it
5.0field-weighted citation impact, top 4% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

50 citing papers in PubMed, 1 synthesis or guideline pooled it, 102 citations in OpenAlex.

  1. Pooled it
  2. Article
  3. [Phenotypic and pathogenic variant analysis of an X-linked dominant inherited non-syndromic hearing loss pedigree].Lin chuang er bi yan hou tou jing wai ke za zhi = Journal of clinical otorhinolaryngology head and neck surgery · 2025
    Article
  4. Article
  5. Article
  6. Review
  7. Article
  8. Article
  9. A novel missense mutation inTranslational pediatrics · 2021
    Article
  10. Article
  11. Frontiers in cell and developmental biology · 2021
    Article
  12. Article
  13. Analysis of FGF20-regulated genes in organ of Corti progenitors by translating ribosome affinity purification.Developmental dynamics : an official publication of the American Association of Anatomists · 2020
    Article
  14. Article
  15. Article
  16. Utility and limitations of exome sequencing as a genetic diagnostic tool for children with hearing loss.Genetics in medicine : official journal of the American College of Medical Genetics · 2018
    Article
  17. Genetic Hearing Loss and Gene Therapy.Genomics & informatics · 2018
    Article
  18. Article
  19. Review
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

13 authors at 3 institutions in 2 countries.

Margit SchradersDepartment of Otorhinolaryngology, Head and Neck Surgery, Nijmegen, Radboud University Nijmegen Medical Centre, Nijmegen, The Netherlands.
Stefan A Haas
Nicole J D Weegerink
Jaap Oostrik
Hao Hu
Lies H Hoefsloot
Sriram Kannan
Patrick L M Huygen
Ronald J E Pennings
Ronald J C Admiraal
Vera M Kalscheuer
Henricus P M Kunst
Hannie Kremer
Radboud University Medical Center · NLRadboud University Nijmegen · NLMax Planck Institute for Molecular Genetics · DE

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

In a Dutch family with an X-linked postlingual progressive hearing impairment, a critical linkage interval was determined to span a region of 12.9 Mb flanked by the markers DXS7108 and DXS7110. This interval overlaps with the previously described DFNX4 locus and contains 75 annotated genes. Subsequent next-generation sequencing (NGS) detected one variant within the linkage interval, a nonsense mutation in SMPX. SMPX encodes the small muscle protein, X-linked (SMPX). Further screening was performed on 26 index patients from small families for which X-linked inheritance of nonsyndromic hearing impairment (NSHI) was not excluded. We detected a frameshift mutation in SMPX in one of the patients. Segregation analysis of both mutations in the families in whom they were found revealed that the mutations cosegregated with hearing impairment. Although we show that SMPX is expressed in many different organs, including the human inner ear, no obvious symptoms other than hearing impairment were observed in the patients. SMPX had previously been demonstrated to be specifically expressed in striated muscle and, therefore, seemed an unlikely candidate gene for hearing impairment. We hypothesize that SMPX functions in inner ear development and/or maintenance in the IGF-1 pathway, the integrin pathway through Rac1, or both.

Indexed as

Codon, NonsenseGenes, X-LinkedAdolescentAdultChildChild, PreschoolDNA Mutational AnalysisFemaleFrameshift MutationHearing LossHumansInsulin-Like Growth Factor IMaleMiddle AgedMolecular Sequence AnnotationMuscle ProteinsCodon, NonsenseInsulin-Like Growth Factor IMuscle ProteinsSMPX protein, human

Identifiers

PMID21549342
PMCPMC3146715
OpenAlexW2046077362

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.