Evidence map›Paper›PMID 21549154›Full record

ArticleAntiviral research2011

Interference of ribosomal frameshifting by antisense peptide nucleic acids suppresses SARS coronavirus replication.

Dae-Gyun Ahn, Wooseong Lee, Jin-Kyu Choi, Seong-Jun Kim, Ewan P Plant, Fernando Almazán, Deborah R Taylor, Luis Enjuanes, Jong-Won Oh

Open access · greenAbstract read
In one paragraph

Article in Antiviral research, 2011. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 64 papers.

0numbers the graph read from it
0cells of the map it votes in
64citing papers in PubMed
9.4field-weighted citation impact, top 2% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

64 citing papers in PubMed, 110 citations in OpenAlex.

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4 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 3 institutions in 3 countries.

Dae-Gyun AhnDepartment of Biotechnology and Translational Research Center for Protein Function Control, Yonsei University, Seoul, Republic of Korea.
Wooseong Lee
Jin-Kyu Choi
Seong-Jun Kim
Ewan P Plant
Fernando Almazán
Deborah R Taylor
Luis Enjuanes
Jong-Won Oh
Yonsei University · KRCenter for Biologics Evaluation and Research · USCentro Nacional de Biotecnología · ES

Funding

SARS-CoV Proteins in Heterologous Viral InfectionP01AI060699 · NIAID · UNIVERSITY OF IOWA · PI PERLMAN, STANLEY · 2004 to 2021
$21.5M
NIAID NIH HHS P01 AI060699
6 · The paper itself

Abstract

The programmed -1 ribosomal frameshifting (-1 PRF) utilized by eukaryotic RNA viruses plays a crucial role for the controlled, limited synthesis of viral RNA replicase polyproteins required for genome replication. The viral RNA replicase polyproteins of severe acute respiratory syndrome coronavirus (SARS-CoV) are encoded by the two overlapping open reading frames 1a and 1b, which are connected by a -1 PRF signal. We evaluated the antiviral effects of antisense peptide nucleic acids (PNAs) targeting a highly conserved RNA sequence on the - PRF signal. The ribosomal frameshifting was inhibited by the PNA, which bound sequence-specifically a pseudoknot structure in the -1 PRF signal, in cell lines as assessed using a dual luciferase-based reporter plasmid containing the -1 PRF signal. Treatment of cells, which were transfected with a SARS-CoV-replicon expressing firefly luciferase, with the PNA fused to a cell-penetrating peptide (CPP) resulted in suppression of the replication of the SARS-CoV replicon, with a 50% inhibitory concentration of 4.4μM. There was no induction of type I interferon responses by PNA treatment, suggesting that the effect of PNA is not due to innate immune responses. Our results demonstrate that -1 PRF, critical for SARS-CoV viral replication, can be inhibited by CPP-PNA, providing an effective antisense strategy for blocking -1 PRF signals.

Indexed as

Frameshifting, RibosomalVirus ReplicationAnimalsAntiviral AgentsCell LineCell-Penetrating PeptidesCricetinaeElectrophoretic Mobility Shift AssayGenes, OverlappingGenes, ReporterGenome, ViralHumansInterferon Type ILuciferases, FireflyOligoribonucleotides, AntisenseOpen Reading FramesAntiviral AgentsCell-Penetrating PeptidesInterferon Type ILuciferases, FireflyOligoribonucleotides, AntisenseRNA-Dependent RNA PolymeraseRNA, Viral

Identifiers

PMID21549154
PMCPMC4728714
OpenAlexW2046093417

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.