Evidence map›Paper›PMID 21548961›Full record

ArticleBMC molecular biology2011

The four Zn fingers of MBNL1 provide a flexible platform for recognition of its RNA binding elements.

Danielle Cass, Rachel Hotchko, Paul Barber, Kimberly Jones, Devika P Gates, J Andrew Berglund

Open access · hybridAbstract read
In one paragraph

Article in BMC molecular biology, 2011. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 29 papers.

0numbers the graph read from it
0cells of the map it votes in
29citing papers in PubMed
2.1field-weighted citation impact, top 13% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

29 citing papers in PubMed, 41 citations in OpenAlex.

  1. Review
  2. Review
  3. Article
  4. Transcription FactorJournal of fungi (Basel, Switzerland) · 2023
    Article
  5. Article
  6. Review
  7. An Overview of Circular RNAs and Their Implications in Myotonic Dystrophy.International journal of molecular sciences · 2019
    Review
  8. Review
  9. Expanded CUG repeats inRNA (New York, N.Y.) · 2019
    Article
  10. Article
  11. Article
  12. Article
  13. Article
  14. Article
  15. Review
  16. Article
  17. Article
  18. Review
  19. Myocardial ischemic preconditioning upregulated protein 1(Mipu1):zinc finger protein 667 - a multifunctional KRAB/C2H2 zinc finger protein.Brazilian journal of medical and biological research = Revista brasileira de pesquisas medicas e biologica · 2015
    Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 3 institutions in 1 country.

Danielle CassDepartment of Chemistry, Reed College, Portland, OR 97202, USA.
Rachel Hotchko
Paul Barber
Kimberly Jones
Devika P Gates
J Andrew Berglund
University of Oregon · USReed College · USSt. Mary's College of Maryland · US

Funding

Molecular Mechanisms of Myotonic DystrophyR01AR053903 · NIAMS · UNIVERSITY OF OREGON · PI BERGLUND, ANDREW · 2006 to 2010
$1.3M
NIAMS NIH HHS AR053903NIAMS NIH HHS AR053903-03S1NIAMS NIH HHS R01 AR053903
6 · The paper itself

Abstract

backgroundMuscleblind-like 1 (MBNL1) is an alternative splicing factor containing four CCCH Zinc fingers (ZnFs). The sequestration of MBNL1 by expanded CUG and CCUG repeats is a major component in causing myotonic dystrophy. In addition to binding the structured expanded CUG and CCUG repeats; previous results suggested that MBNL1 binds single-stranded RNAs containing GC dinucleotides.

resultsWe performed a systematic analysis of MBNL1 binding to single-stranded RNAs. These studies revealed that a single GC dinucleotide in poly-uridine is sufficient for MBNL1 binding and that a second GC dinucleotide confers higher affinity MBNL1 binding. However additional GC dinucleotides do not enhance RNA binding. We also showed that the RNA sequences adjacent to the GC dinucleotides play an important role in MBNL1 binding with the following preference: uridines >cytidines >adenosines >guanosines. For high affinity binding by MBNL1, the distance between the two GC dinucleotides can vary from 1 to 17 nucleotides.

conclusionsThese results suggest that MBNL1 is highly flexible and able to adopt different conformations to recognize RNAs with varying sequence configurations. Although MBNL1 contains four ZnFs, only two ZnF - GC dinucleotide interactions are necessary for high affinity binding.

Indexed as

Zinc FingersBase SequenceCytosine NucleotidesGuanine NucleotidesModels, MolecularProtein BindingRNARNA-Binding ProteinsCytosine NucleotidesGuanine NucleotidesMBNL1 protein, humanRNARNA-Binding Proteins

Identifiers

PMID21548961
PMCPMC3103431
OpenAlexW2073508021

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.