ArticleNeuroinformatics2011
Automated reconstruction of neuronal morphology based on local geometrical and global structural models.
Article in Neuroinformatics, 2011. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 53 papers.
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Who cites it
53 citing papers in PubMed.
- Morphological and functional decline of the SNc in a model of progressive parkinsonism.NPJ Parkinson's disease · 2025Article
- NeuroEditor: a tool to edit and visualize neuronal morphologies.Frontiers in neuroanatomy · 2024Article
- BigNeuron: a resource to benchmark and predict performance of algorithms for automated tracing of neurons in light microscopy datasets.Nature methods · 2023Article
- SNAP: a structure-based neuron morphology reconstruction automatic pruning pipeline.Frontiers in neuroinformatics · 2023Article
- Neuron tracing from light microscopy images: automation, deep learning and bench testing.Bioinformatics (Oxford, England) · 2022Review
- Super-resolution Segmentation Network for Reconstruction of Packed Neurites.Neuroinformatics · 2022Article
- Smart imaging to empower brain-wide neuroscience at single-cell levels.Brain informatics · 2022Review
- GTree: an Open-source Tool for Dense Reconstruction of Brain-wide Neuronal Population.Neuroinformatics · 2021Article
- Automated Neuron Tracing Using Content-Aware Adaptive Voxel Scooping on CNN Predicted Probability Map.Frontiers in neuroanatomy · 2021Article
- PyNeval: A Python Toolbox for Evaluating Neuron Reconstruction Performance.Frontiers in neuroinformatics · 2021Article
- Weakly Supervised Learning of 3D Deep Network for Neuron Reconstruction.Frontiers in neuroanatomy · 2020Article
- Identifying Weak Signals in Inhomogeneous Neuronal Images for Large-Scale Tracing of Sparsely Distributed Neurites.Neuroinformatics · 2019Article
- Automated Neuron Reconstruction from 3D Fluorescence Microscopy Images Using Sequential Monte Carlo Estimation.Neuroinformatics · 2019Article
- ShuTu: Open-Source Software for Efficient and Accurate Reconstruction of Dendritic Morphology.Frontiers in neuroinformatics · 2019Article
- Optimization of Traced Neuron Skeleton Using Lasso-Based Model.Frontiers in neuroanatomy · 2019Article
- Visualization of Neuronal Structures in Wide-Field Microscopy Brain Images.IEEE transactions on visualization and computer graphics · 2018Article
- Automated sorting of neuronal trees in fluorescent images of neuronal networks using NeuroTreeTracer.Scientific reports · 2018Article
- Automated 3D Soma Segmentation with Morphological Surface Evolution for Neuron Reconstruction.Neuroinformatics · 2018Article
- SmartScope2: Simultaneous Imaging and Reconstruction of Neuronal Morphology.Scientific reports · 2017Article
- SparseTracer: the Reconstruction of Discontinuous Neuronal Morphology in Noisy Images.Neuroinformatics · 2017Article
Corrections and comments
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Authors and funding
8 authors.
Funding
Abstract
Digital reconstruction of neurons from microscope images is an important and challenging problem in neuroscience. In this paper, we propose a model-based method to tackle this problem. We first formulate a model structure, then develop an algorithm for computing it by carefully taking into account morphological characteristics of neurons, as well as the image properties under typical imaging protocols. The method has been tested on the data sets used in the DIADEM competition and produced promising results for four out of the five data sets.
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Registered trials
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