Evidence map›Paper›PMID 21547061›Full record

ArticleInternational journal of biological sciences2011

Identification of pluripotency genes in the fish medaka.

Danke Wang, Dwarakanath Manali, Tiansu Wang, Narayani Bhat, Ni Hong, Zhendong Li, Li Wang, Yan Yan, Rong Liu, Yunhan Hong

Open access · goldAbstract read
In one paragraph

Article in International journal of biological sciences, 2011. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 37 papers.

0numbers the graph read from it
0cells of the map it votes in
37citing papers in PubMed
5.4field-weighted citation impact, top 4% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

37 citing papers in PubMed, 76 citations in OpenAlex.

  1. Article
  2. Emerging Frontiers in Zebrafish Embryonic and Adult-Derived Cell Lines.International journal of molecular sciences · 2025
    Review
  3. Pluripotent cells derived from 50% epiboly zebrafish embryos.In vitro cellular & developmental biology. Animal · 2025
    Article
  4. Research progress of nanog gene in fish.Molecular genetics and genomics : MGG · 2024
    Review
  5. Article
  6. Article
  7. Article
  8. Article
  9. Article
  10. Genes · 2021
    Article
  11. Article
  12. The transcription factor Zfp281 sustains CD4Cellular & molecular immunology · 2020
    Article
  13. Article
  14. MeagreAnimals : an open access journal from MDPI · 2020
    Article
  15. Review
  16. Article
  17. Article
  18. Article
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 1 institution in 1 country.

Danke WangDepartment of Biological Sciences, National University of Singapore, 10 Kent Ridge Crescent, Singapore 119260.
Dwarakanath Manali
Tiansu Wang
Narayani Bhat
Ni Hong
Zhendong Li
Li Wang
Yan Yan
Rong Liu
Yunhan Hong
National University of Singapore · SG

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Stem cell cultures can be derived directly from early developing embryos and indirectly from differentiated cells by forced expression of pluripotency transcription factors. Pluripotency genes are routinely used to characterize mammalian stem cell cultures at the molecular level. However, such genes have remained unknown in lower vertebrates. In this regard, the laboratory fish medaka is uniquely suited because it has embryonic stem (ES) cells and genome sequence data. We identified seven medaka pluripotency genes by homology search and expression in vivo and in vitro. By RT-PCR analysis, the seven genes fall into three groups of expression pattern. Group I includes nanog and oct4 showing gonad-specific expression; Group II contains sall4 and zfp281 displaying gonad-preferential expression; Group III has klf4, ronin and tcf3 exhibiting expression also in several somatic tissues apart from the gonads. The transcripts of the seven genes are maternally supplied and persist at a high level during early embryogenesis. We made use of early embryos and adult gonads to examine expression in stem cells and differentiated derivatives by in situ hybridization. Strikingly, nanog and oct4 are highly expressed in pluripotent blastomeres of 16-cell embryos. In the adult testis, nanog expression was specific to spermatogonia, the germ stem cells, whereas tcf3 expression occurred in spermatogonia and differentiated cells. Most importantly, all the seven genes are pluripotency markers in vitro, because they have high expression in undifferentiated ES cells but dramatic down-regulation upon differentiation. Therefore, these genes have conserved their pluripotency-specific expression in vitro from mammals to lower vertebrates.

Indexed as

Amino Acid SequenceAnimalsBiomarkersBlastomeresCell DifferentiationCells, CulturedEmbryonic DevelopmentEmbryo, NonmammalianFemaleFish ProteinsHomeodomain ProteinsIn Situ HybridizationMaleMolecular Sequence DataOctamer Transcription Factor-3OryziasBiomarkersFish ProteinsHomeodomain ProteinsOctamer Transcription Factor-3Transcription Factor 7-Like 1 Proteinmedakananogoct4pluripotencystem cellstcf3

Identifiers

PMID21547061
PMCPMC3088286
OpenAlexW2045840559

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.