Evidence map›Paper›PMID 21547060›Full record

ArticleInternational journal of biological sciences2011

Medaka tert produces multiple variants with differential expression during differentiation in vitro and in vivo.

Feng Rao, Tiansu Wang, Mingyou Li, Zhendong Li, Ni Hong, Haobin Zhao, Yan Yan, Wenqing Lu, Tiansheng Chen, Weijia Wang and 8 more

Open access · goldAbstract read
In one paragraph

Article in International journal of biological sciences, 2011. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed
1.6field-weighted citation impact, top 18% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

7 citing papers in PubMed, 14 citations in OpenAlex.

  1. Article
  2. Article
  3. Telomerase regulation.Mutation research · 2012
    Review
  4. Identification of pluripotency genes in the fish medaka.International journal of biological sciences · 2011
    Article
  5. Medaka cleavage embryos are capable of generating ES-like cell cultures.International journal of biological sciences · 2011
    Article
  6. Fishing fish stem cells and nuclear transplants.International journal of biological sciences · 2011
    Article
  7. Fish stem cell cultures.International journal of biological sciences · 2011
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

18 authors at 6 institutions in 4 countries.

Feng RaoDepartment of Biological Sciences, National University of Singapore, 10 Kent Ridge Crescent, Singapore 119260.
Tiansu Wang
Mingyou Li
Zhendong Li
Ni Hong
Haobin Zhao
Yan Yan
Wenqing Lu
Tiansheng Chen
Weijia Wang
Menghuat Lim
Yongming Yuan
Ling Liu
Lingbing Zeng
Qiwei Wei
Guijun Guan
Changming Li
Yunhan Hong
National University of Singapore · SGChinese Academy of Fishery Sciences · CNNanyang Technological University · SGCentral China Normal University · CNJohns Hopkins Medicine · USNational Institute for Basic Biology · JP

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Embryonic stem (ES) cells have immortality for self-renewal and pluripotency. Differentiated human cells undergo replicative senescence. In human, the telomerase reverse transcriptase (Tert), namely the catalytic subunit of telomerase, exhibits differential expression to regulate telomerase activity governing cellular immortality or senescence, and telomerase activity or tert expression is a routine marker of pluripotent ES cells. Here we have identified the medaka tert gene and determined its expression and telomerase activity in vivo and in vitro. We found that the medaka tert locus produces five variants called terta to terte encoding isoforms TertA to TertE. The longest TertA consists of 1090 amino acid residues and displays a maximum of 34% identity to the human TERT and all the signature motifs of the Tert family. TertB to TertE are novel isoforms and have considerable truncation due to alternative splicing. The terta RNA is ubiquitous in embryos, adult tissues and cell lines, and accompanies ubiquitous telomerase activity in vivo and in vitro as revealed by TRAP assays. The tertb RNA was restricted to the testis, absent in embryos before gastrulation and barely detectable in various cell lines The tertc transcript was absent in undifferentiated ES cells but became evident upon ES cell differentiation, in vivo it was barely detectable in early embryos and became evident when embryogenesis proceeds. Therefore, ubiquitous terta expression correlates with ubiquitous telomerase activity in medaka, and expression of other tert variants appears to delineate cell differentiation in vitro and in vivo.

Indexed as

Alternative SplicingAmino Acid SequenceAnimalsBase SequenceCell DifferentiationCell LineChromosome MappingDNA, ComplementaryEmbryonic Stem CellsEmbryo, NonmammalianFemaleGene Expression Regulation, DevelopmentalGene LibraryIsoenzymesMaleMolecular Sequence DataDNA, ComplementaryIsoenzymesTelomerasemedakapluripotencysenescencetelomerasetertTRAP

Identifiers

PMID21547060
PMCPMC3088285
OpenAlexW2132159683

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.