Evidence map›Paper›PMID 21545095›Full record

ArticleAnalytical chemistry2011

Characterizing DNA methyltransferases with an ultrasensitive luciferase-linked continuous assay.

Ivan Hemeon, Jemy A Gutierrez, Meng-Chiao Ho, Vern L Schramm

Abstract read
In one paragraph

Article in Analytical chemistry, 2011. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 22 papers.

0numbers the graph read from it
0cells of the map it votes in
22citing papers in PubMed
2.0field-weighted citation impact, top 14% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

22 citing papers in PubMed, 42 citations in OpenAlex.

  1. Review
  2. Article
  3. Article
  4. Article
  5. Article
  6. Identification of the mMolecular cell · 2019
    Article
  7. Lysine methylation signaling of non-histone proteins in the nucleus.Cellular and molecular life sciences : CMLS · 2019
    Review
  8. Article
  9. Article
  10. A simplified characterization ofChemical science · 2017
    Article
  11. Article
  12. Resveratrol-salicylate derivatives as selective DNMT3 inhibitors and anticancer agents.Journal of enzyme inhibition and medicinal chemistry · 2016
    Article
  13. Human DNMT1 transition state structure.Proceedings of the National Academy of Sciences of the United States of America · 2016
    Article
  14. Small Molecule Inhibitors of Protein Arginine Methyltransferases.Expert opinion on investigational drugs · 2016
    Review
  15. A Comparative Analysis of Acyl-Homoserine Lactone Synthase Assays.Chembiochem : a European journal of chemical biology · 2015
    Article
  16. Article
  17. Article
  18. Article
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 1 institution in 1 country.

Ivan HemeonDepartment of Biochemistry, Albert Einstein College of Medicine of Yeshiva University, 1300 Morris Park Avenue, Bronx, New York 10461, USA.
Jemy A Gutierrez
Meng-Chiao Ho
Vern L Schramm
Yeshiva University · US

Funding

RICIN--MECHANISM, TRANSITION STATE AND INHIBITOR DESIGNR01CA072444 · NCI · YESHIVA UNIVERSITY · PI SCHRAMM, VERN L. · 1997 to 2011
$4.4M
Transition State Analogues as Modulators of DNA MethylationR01CA135405 · NCI · ALBERT EINSTEIN COLLEGE OF MEDICINE, INC · PI SCHRAMM, VERN L. · 2008 to 2018
$2.8M
NCI NIH HHS CA135405NCI NIH HHS R01 CA072444NCI NIH HHS R01 CA135405
6 · The paper itself

Abstract

DNA (cytosine-5)-methyltransferases (DNMTs) catalyze the transfer of a methyl group from S-adenosyl-L-methionine (AdoMet) to the 5-position of cytosine residues and thereby silence transcription of regulated genes. DNMTs are important epigenetic targets. However, isolated DNMTs are weak catalysts and are difficult to assay. We report an ultrasensitive luciferase-linked continuous assay that converts the S-adenosyl-L-homocysteine product of DNA methylation to a quantifiable luminescent signal. Results with this assay are compared with the commonly used DNA labeling from [methyl-(3)H]AdoMet. A 5'-methylthioadenosine-adenosylhomocysteine nucleosidase is used to hydrolyze AdoHcy to adenine. Adenine phosphoribosyl transferase converts adenine to AMP and pyruvate orthophosphate dikinase converts AMP to ATP. Firefly luciferase gives a stable luminescent signal that results from continuous AMP recycling to ATP. This assay exhibits a broad dynamic range (0.1-1000 pmol of AdoHcy). The rapid response time permits continuous assays of DNA methylation detected by light output. The assay is suitable for high-throughput screening of chemical libraries for DNMT inhibition activity. The kinetic properties of human and bacterial CpG methyltransferases are characterized using this assay. Human catalytic domain DNMT3b activation by DNMT3L is shown to involve two distinct kinetic states that alter k(cat) but not K(m) for AdoMet. The assay is shown to be robust in the presence of high concentrations of the pyrimidine analogues 5-azacytidine and 5-azacytosine.

Indexed as

AzacitidineBacteriaCytosineDeoxyadenosinesDNA (Cytosine-5-)-Methyltransferase 1DNA (Cytosine-5-)-MethyltransferasesDNA MethylationEnzyme AssaysHumansKineticsLightLuciferasesS-AdenosylhomocysteineS-AdenosylmethionineThionucleosides5-azacytosine5'-methylthioadenosineAzacitidineCytosineDeoxyadenosinesDNA (Cytosine-5-)-Methyltransferase 1DNA (Cytosine-5-)-MethyltransferasesLuciferasesS-AdenosylhomocysteineS-AdenosylmethionineThionucleosides

Identifiers

PMID21545095
PMCPMC3115440
OpenAlexW2018541344

What OpenQuestion holds

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Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.