Evidence map›Paper›PMID 21545089›Full record

ArticleAnalytical chemistry2011

Rapid detection of urinary tract infections using isotachophoresis and molecular beacons.

M Bercovici, G V Kaigala, K E Mach, C M Han, J C Liao, J G Santiago

Abstract read
In one paragraph

Article in Analytical chemistry, 2011. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 14 papers.

0numbers the graph read from it
0cells of the map it votes in
14citing papers in PubMed
9.7field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

14 citing papers in PubMed, 95 citations in OpenAlex.

  1. Article
  2. Review
  3. Nucleic acid sample preparation from whole blood in a paper microfluidic device using isotachophoresis.Journal of chromatography. B, Analytical technologies in the biomedical and life sciences · 2021
    Article
  4. Electric field-driven microfluidics for rapid CRISPR-based diagnostics and its application to detection of SARS-CoV-2.Proceedings of the National Academy of Sciences of the United States of America · 2020
    Article
  5. Article
  6. Article
  7. Article
  8. Review
  9. Article
  10. Article
  11. Review
  12. Rapid hybridization of nucleic acids using isotachophoresis.Proceedings of the National Academy of Sciences of the United States of America · 2012
    Article
  13. Article
  14. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 1 institution in 1 country.

M BercoviciDepartment of Mechanical Engineering, Stanford University, California 94305, USA.
G V Kaigala
K E Mach
C M Han
J C Liao
J G Santiago
Stanford University · US

Funding

An Integrated Diagnostic Biochip for Point of Care Pathogen IdentificationU01AI082457 · NIAID · PALO ALTO VETERANS INSTIT FOR RESEARCH · PI LIAO, JOSEPH C · 2009 to 2013
$3.7M
NIAID NIH HHS U01 AI 082457NIAID NIH HHS U01 AI082457
6 · The paper itself

Abstract

We present a novel assay for rapid detection and identification of bacterial urinary tract infections using isotachophoresis (ITP) and molecular beacons. We applied on-chip ITP to extract and focus 16S rRNA directly from bacterial lysate and used molecular beacons to achieve detection of bacteria specific sequences. We demonstrated detection of E. coli in bacteria cultures as well as in patient urine samples in the clinically relevant range 1E6-1E8 cfu/mL. For bacterial cultures we further demonstrate quantification in this range. The assay requires minimal sample preparation (a single centrifugation and dilution), and can be completed, from beginning of lysing to detection, in under 15 min. We believe that the principles presented here can be used for design of other rapid diagnostics or detection methods for pathogenic diseases.

Indexed as

BacteriaEscherichia coliFluorescent DyesHumansIsotachophoresisMicrofluidic Analytical TechniquesRNA, Ribosomal, 16SUrinary Tract InfectionsFluorescent DyesRNA, Ribosomal, 16S

Identifiers

PMID21545089
PMCPMC3116659
OpenAlexW2048967821

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.