ArticleDatabase : the journal of biological databases and curation2011
Methods and strategies for gene structure curation in WormBase.
Article in Database : the journal of biological databases and curation, 2011. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 10 papers.
What it found
Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.
The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.
The trial behind it
Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.
Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.
Who cites it
10 citing papers in PubMed.
- Novel and improved Caenorhabditis briggsae gene models generated by community curation.BMC genomics · 2023Article
- Long-read RNA sequencing of human and animal filarial parasites improves gene models and discovers operons.PLoS neglected tropical diseases · 2020Article
- The full-length transcriptome ofGenome research · 2020Article
- Benchmarks for measurement of duplicate detection methods in nucleotide databases.Database : the journal of biological databases and curation · 2017Article
- Duplicates, redundancies and inconsistencies in the primary nucleotide databases: a descriptive study.Database : the journal of biological databases and curation · 2017Article
- WormBase 2014: new views of curated biology.Nucleic acids research · 2014Article
- WormBase 2012: more genomes, more data, new website.Nucleic acids research · 2012Article
- Considerations for creating and annotating the budding yeast Genome Map at SGD: a progress report.Database : the journal of biological databases and curation · 2012Article
- WormBase: Annotating many nematode genomes.Worm · 2012Article
- The curation paradigm and application tool used for manual curation of the scientific literature at the Comparative Toxicogenomics Database.Database : the journal of biological databases and curation · 2011Article
Corrections and comments
PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.
Authors and funding
6 authors.
Funding
Abstract
The Caenorhabditis elegans genome sequence was published over a decade ago; this was the first published genome of a multi-cellular organism and now the WormBase project has had a decade of experience in curating this genome's sequence and gene structures. In one of its roles as a central repository for nematode biology, WormBase continues to refine the gene structure annotations using sequence similarity and other computational methods, as well as information from the literature- and community-submitted annotations. We describe the various methods of gene structure curation that have been tried by WormBase and the problems associated with each of them. We also describe the current strategy for gene structure curation, and introduce the WormBase 'curation tool', which integrates different data sources in order to identify new and correct gene structures. Database URL: http://www.wormbase.org/.
Indexed as
Identifiers
What OpenQuestion holds
Registered trials
Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.