Evidence map›Paper›PMID 21541325›Full record

ArticlePloS one2011

A requirement of TolC and MDR efflux pumps for acid adaptation and GadAB induction in Escherichia coli.

Kari N W Deininger, Akina Horikawa, Ryan D Kitko, Ryoko Tatsumi, Judah L Rosner, Masaaki Wachi, Joan L Slonczewski

Open access · goldAbstract read
In one paragraph

Article in PloS one, 2011. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 30 papers.

0numbers the graph read from it
0cells of the map it votes in
30citing papers in PubMed
2.0field-weighted citation impact, top 13% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

30 citing papers in PubMed, 60 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 3 institutions in 2 countries.

Kari N W DeiningerDepartment of Biology, Kenyon College, Gambier, Ohio, United States of America.
Akina Horikawa
Ryan D Kitko
Ryoko Tatsumi
Judah L Rosner
Masaaki Wachi
Joan L Slonczewski
Kenyon College · USTokyo Institute of Technology · JPNational Institute of Diabetes and Digestive and Kidney Diseases · US

Funding

Nonheritable Antibiotic ResistanceZIADK036003 · NIDDK · NATIONAL INSTITUTE OF DIABETES AND DIGESTIVE AND KIDNEY DISEASES · PI ROSNER, JUDAH L · 2009 to 2016
$2.1M
6 · The paper itself

Abstract

backgroundThe TolC outer membrane channel is a key component of several multidrug resistance (MDR) efflux pumps driven by H(+) transport in Escherichia coli. While tolC expression is under the regulation of the EvgA-Gad acid resistance regulon, the role of TolC in growth at low pH and extreme-acid survival is unknown. METHODS AND PRINCIPAL

findingsTolC was required for extreme-acid survival (pH 2) of strain W3110 grown aerobically to stationary phase. A tolC deletion decreased extreme-acid survival (acid resistance) of aerated pH 7.0-grown cells by 10(5)-fold and of pH 5.5-grown cells by 10-fold. The requirement was specific for acid resistance since a tolC defect had no effect on aerobic survival in extreme base (pH 10). TolC was required for expression of glutamate decarboxylase (GadA, GadB), a key component of glutamate-dependent acid resistance (Gad). TolC was also required for maximal exponential growth of E. coli K-12 W3110, in LBK medium buffered at pH 4.5-6.0, but not at pH 6.5-8.5. The TolC growth requirement in moderate acid was independent of Gad. TolC-associated pump components EmrB and MdtB contributed to survival in extreme acid (pH 2), but were not required for growth at pH 5. A mutant lacking the known TolC-associated efflux pumps (acrB, acrD, emrB, emrY, macB, mdtC, mdtF, acrEF) showed no growth defect at acidic pH and a relatively small decrease in extreme-acid survival when pre-grown at pH 5.5.

conclusionsTolC and proton-driven MDR efflux pump components EmrB and MdtB contribute to E. coli survival in extreme acid and TolC is required for maximal growth rates below pH 6.5. The TolC enhancement of extreme-acid survival includes Gad induction, but TolC-dependent growth rates below pH 6.5 do not involve Gad. That MDR resistance can enhance growth and survival in acid is an important consideration for enteric organisms passing through the acidic stomach.

Indexed as

AcidsAdaptation, PhysiologicalBacterial Outer Membrane ProteinsDrug Resistance, MultipleEnzyme InductionEscherichia coli K12Escherichia coli ProteinsGlutamate DecarboxylaseGlutamatesHydrogen-Ion ConcentrationMembrane ProteinsMembrane Transport ProteinsMicrobial ViabilityMutationAcidsBacterial Outer Membrane ProteinsEscherichia coli ProteinsgadA protein, E coliGlutamate DecarboxylaseGlutamatesMembrane ProteinsMembrane Transport ProteinstolC protein, E coli

Identifiers

PMID21541325
PMCPMC3082540
OpenAlexW2115631653

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.