Evidence map›Paper›PMID 21540434›Full record

ArticleThe Plant cell2011

BARREN STALK FASTIGIATE1 is an AT-hook protein required for the formation of maize ears.

Andrea Gallavotti, Simon Malcomber, Craig Gaines, Sharon Stanfield, Clinton Whipple, Elizabeth Kellogg, Robert J Schmidt

Open access · hybridAbstract read
In one paragraph

Article in The Plant cell, 2011. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 51 papers.

0numbers the graph read from it
0cells of the map it votes in
51citing papers in PubMed
9.4field-weighted citation impact, top 2% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

51 citing papers in PubMed, 100 citations in OpenAlex.

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  11. Systematical Characterization of theInternational journal of molecular sciences · 2023
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  12. Review
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  18. Review
  19. Article
  20. MicroRNA-resistant alleles ofScience advances · 2022
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 3 institutions in 1 country.

Andrea GallavottiSection of Cell and Developmental Biology, University of California-San Diego, La Jolla, CA 92093-0116, USA. agallavotti@ucsd.edu
Simon Malcomber
Craig Gaines
Sharon Stanfield
Clinton Whipple
Elizabeth Kellogg
Robert J Schmidt
University of California, San Diego · USCalifornia State University, Long Beach · USUniversity of Missouri–St. Louis · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Ears are the seed-bearing inflorescences of maize (Zea mays) plants and represent a crucial component of maize yield. The first step in the formation of ears is the initiation of axillary meristems in the axils of developing leaves. In the classic maize mutant barren stalk fastigiate1 (baf1), first discovered in the 1950s, ears either do not form or, if they do, are partially fused to the main stalk. We positionally cloned Baf1 and found that it encodes a transcriptional regulator containing an AT-hook DNA binding motif. Single coorthologs of Baf1 are found in syntenic regions of brachypodium (Brachypodium distachyon), rice (Oryza sativa), and sorghum (Sorghum bicolor), suggesting that the gene is likely present in all cereal species. Protein-protein interaction assays suggest that BAF1 is capable of forming homodimers and heterodimers with other members of the AT-hook family. Another transcriptional regulator required for ear initiation is the basic helix-loop-helix protein BARREN STALK1 (BA1). Genetic and expression analyses suggest that Baf1 is required to reach a threshold level of Ba1 expression for the initiation of maize ears. We propose that Baf1 functions in the demarcation of a boundary region essential for the specification of a stem cell niche.

Indexed as

Amino Acid SequenceAT-Hook MotifsBase SequenceBrachypodiumDNA-Binding ProteinsGenes, PlantInflorescenceMeristemMolecular Sequence DataMutationOryzaPhenotypePhylogenyPlant ProteinsProtein Interaction MapsProtein MultimerizationDNA-Binding ProteinsPlant ProteinsTranscription Factors

Identifiers

PMID21540434
PMCPMC3123940
OpenAlexW2102159144

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.