Evidence map›Paper›PMID 21539396›Full record

ArticleJournal of chemical information and modeling2011

Interactions of halichondrin B and eribulin with tubulin.

Ruoli Bai, Tam Luong Nguyen, James C Burnett, Onur Atasoylu, Murray H G Munro, George R Pettit, Amos B Smith, Rick Gussio, Ernest Hamel

Open access · greenAbstract read
In one paragraph

Article in Journal of chemical information and modeling, 2011. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 20 papers.

0numbers the graph read from it
0cells of the map it votes in
20citing papers in PubMed
2.9field-weighted citation impact, top 10% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

20 citing papers in PubMed, 58 citations in OpenAlex.

  1. Review
  2. The interaction of spongistatin 1 with tubulin.Archives of biochemistry and biophysics · 2022
    Article
  3. Interaction of diazonamide A with tubulin.Archives of biochemistry and biophysics · 2020
    Article
  4. Article
  5. Article
  6. Managing sarcoma: where have we come from and where are we going?Therapeutic advances in medical oncology · 2017
    Review
  7. Article
  8. Article
  9. Article
  10. Article
  11. Article
  12. Eribulin mesylate: mechanism of action of a unique microtubule-targeting agent.Clinical cancer research : an official journal of the American Association for Cancer Research · 2015
    Review
  13. Article
  14. Article
  15. Article
  16. Article
  17. Article
  18. Article
  19. Review
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 5 institutions in 2 countries.

Ruoli BaiScreening Technologies Branch, Developmental Therapeutics Program, Division of Cancer Treatment and Diagnosis, National Cancer Institute at Frederick, National Institutes of Health, Frederick, Maryland 21702, United States.
Tam Luong Nguyen
James C Burnett
Onur Atasoylu
Murray H G Munro
George R Pettit
Amos B Smith
Rick Gussio
Ernest Hamel
National Institutes of Health · USScience Applications International Corporation (United States) · USUniversity of Pennsylvania · USArizona State University · USUniversity of Canterbury · NZ

Funding

Intramural NIH HHS Z99 CA999999NCI NIH HHS N01 CO012400NCI NIH HHS N01-CO-12400
6 · The paper itself

Abstract

Compounds that modulate microtubule dynamics include highly effective anticancer drugs, leading to continuing efforts to identify new agents and improve the activity of established ones. Here, we demonstrate that [(3)H]-labeled halichondrin B (HB), a complex, sponge-derived natural product, is bound to and dissociated from tubulin rapidly at one binding site per αβ-heterodimer, with an apparent K(d) of 0.31 μM. We found no HB-induced aggregation of tubulin by high-performance liquid chromatography, even following column equilibration with HB. Binding of [(3)H]HB was competitively inhibited by a newly approved clinical agent, the truncated HB analogue eribulin (apparent K(i), 0.80 μM) and noncompetitively by dolastatin 10 and vincristine (apparent K(i)'s, 0.35 and 5.4 μM, respectively). Our earlier studies demonstrated that HB inhibits nucleotide exchange on β-tubulin, and this, together with the results presented here, indicated the HB site is located on β-tubulin. Using molecular dynamics simulations, we determined complementary conformations of HB and β-tubulin that delineated in atomic detail binding interactions of HB with only β-tubulin, with no involvement of the α-subunit in the binding interaction. Moreover, the HB model served as a template for an eribulin binding model that furthered our understanding of the properties of eribulin as a drug. Overall, these results established a mechanistic basis for the antimitotic activity of the halichondrin class of compounds.

Indexed as

Models, MolecularAnimalsAntimitotic AgentsBinding SitesCattleEthers, CyclicFuransKetonesMacrolidesMolecular Dynamics SimulationPolyether PolyketidesPoriferaProtein BindingProtein MultimerizationProtein Structure, QuaternaryTubulinAntimitotic AgentseribulinEthers, CyclicFuranshalichondrin BKetonesMacrolidesPolyether PolyketidesTubulin

Identifiers

PMID21539396
PMCPMC3130535
OpenAlexW2069289573

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.