Evidence map›Paper›PMID 21536896›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2011

The dominantly expressed class I molecule of the chicken MHC is explained by coevolution with the polymorphic peptide transporter (TAP) genes.

Brian A Walker, Lawrence G Hunt, Anna K Sowa, Karsten Skjødt, Thomas W Göbel, Paul J Lehner, Jim Kaufman

Open access · greenAbstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2011. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 56 papers.

0numbers the graph read from it
0cells of the map it votes in
56citing papers in PubMed
3.3field-weighted citation impact, top 7% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

56 citing papers in PubMed, 94 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 5 institutions in 3 countries.

Brian A WalkerInstitute for Animal Health, Compton RG20 7NN, United Kingdom.
Lawrence G Hunt
Anna K Sowa
Karsten Skjødt
Thomas W Göbel
Paul J Lehner
Jim Kaufman
The Pirbright Institute · GBAddenbrooke's Hospital · GBLudwig-Maximilians-Universität München · DEUniversity of Cambridge · GBUniversity of Southern Denmark · DK

Funding

Biotechnology and Biological Sciences Research CouncilMedical Research Council G0600823Medical Research Council G9800943Wellcome Trust 084957Wellcome Trust 089305
6 · The paper itself

Abstract

In most mammals, the MHC class I molecules are polymorphic and determine the specificity of peptide presentation, whereas the transporter associated with antigen presentation (TAP) heterodimers are functionally monomorphic. In chickens, there are two classical class I genes but only one is expressed at a high level, which can result in strong MHC associations with resistance to particular infectious pathogens. However, the basis for having a single dominantly expressed class I molecule has been unclear. Here we report TAP1 and TAP2 sequences from 16 chicken lines, and show that both genes have high allelic polymorphism and moderate sequence diversity, with variation in positions expected for peptide binding. We analyze peptide translocation in two MHC haplotypes, showing that chicken TAPs specify translocation at three peptide positions, matching the peptide motif of the single dominantly expressed class I molecule. These results show that coevolution between class I and TAP genes can explain the presence of a single dominantly expressed class I molecule in common chicken MHC haplotypes. Moreover, such coevolution in the primordial MHC may have been responsible for the appearance of the antigen presentation pathways at the birth of the adaptive immune system.

Indexed as

Evolution, MolecularAnimalsAntigen PresentationATP-Binding Cassette TransportersChickensHistocompatibility Antigens Class IMolecular Sequence DataProtein TransportATP-Binding Cassette TransportersHistocompatibility Antigens Class Itransporter associated with antigen processing (TAP)

Identifiers

PMID21536896
PMCPMC3100931
OpenAlexW1992260258

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.