Evidence map›Paper›PMID 21536732›Full record

ArticleGenes & development2011

Uncoupling of GTP hydrolysis from eIF6 release on the ribosome causes Shwachman-Diamond syndrome.

Andrew J Finch, Christine Hilcenko, Nicolas Basse, Lesley F Drynan, Beatriz Goyenechea, Tobias F Menne, Africa González Fernández, Paul Simpson, Clive S D'Santos, Mark J Arends and 7 more

Registry-linked trialOpen access · diamondAbstract read
In one paragraph

Article in Genes & development, 2011. The graph could read no effect estimate from its abstract, so it casts no vote on the map. It is linked to trial NCT04275479 (Endocrine Diabetes Screening in Patients With Shwachman-Diamond Syndrome DIABETES/ ENDOCRINE SURVEILLANCE IN SDS), which is not on this map. Cited by 170 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
170citing papers in PubMed, 1 pooled it
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

NCT04275479 terminatednot on this mapstarted 2020, after this paper: background citation

Endocrine Diabetes Screening in Patients With Shwachman-Diamond Syndrome DIABETES/ ENDOCRINE SURVEILLANCE IN SDS

TypeobservationalSponsorWashington University School of MedicineRan2020 to 2022Enrolled11ConditionsShwachman-Diamond SyndromeArmsOral Glucose Tolerance Test, Modified Oral Glucose Tolerance Test, Modified Mixed Meal Tolerance Test, Continuous Glucose Monitor, Food Diary
3 · Its place in the literature

Who cites it

170 citing papers in PubMed, 1 synthesis or guideline pooled it, 283 citations in OpenAlex.

  1. Pooled it
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  18. Protein Multiple Conformation Prediction Using Multi-Objective Evolution Algorithm.Interdisciplinary sciences, computational life sciences · 2024
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110 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

17 authors at 9 institutions in 4 countries.

Andrew J FinchMedical Research Council Laboratory of Molecular Biology, Cambridge CB2 0QH, United Kingdom. ajw@mrc-lmb.cam.ac.uk
Christine Hilcenko
Nicolas Basse
Lesley F Drynan
Beatriz Goyenechea
Tobias F Menne
Africa González Fernández
Paul Simpson
Clive S D'Santos
Mark J Arends
Jean Donadieu
Christine Bellanné-Chantelot
Michael Costanzo
Charles Boone
Andrew N McKenzie
Stefan M V Freund
Alan J Warren
Medical Research Council · GBMRC Laboratory of Molecular Biology · GBUniversity of Cambridge · GBUniversity of Toronto · CAAddenbrooke's Hospital · GBCancer Research UK · GBHôpital Armand-Trousseau · FRSorbonne Université · FRUniversidade de Vigo · ES

Funding

Severe Chronic Neutropenia International RegistryR24AI049393 · NIAID · UNIVERSITY OF WASHINGTON · PI DALE, DAVID CHANDLER · 2004 to 2019
$10.6M
Mapping the reference genetic network of a eukaryotic cellR01HG005853 · NHGRI · UNIVERSITY OF TORONTO · PI ANDREWS, BRENDA JEAN, BOONE, CHARLES · 2010 to 2025
$7.6M
Cancer Research UKCIHR MOP-102629Medical Research Council MC_U105161083Medical Research Council MC_U105178805NHGRI NIH HHS 1R01HG005853-01NHGRI NIH HHS R01 HG005853NIAID NIH HHS R24 AI049393Worldwide Cancer Research 08-0183
6 · The paper itself

Abstract

Removal of the assembly factor eukaryotic initiation factor 6 (eIF6) is critical for late cytoplasmic maturation of 60S ribosomal subunits. In mammalian cells, the current model posits that eIF6 release is triggered following phosphorylation of Ser 235 by activated protein kinase C. In contrast, genetic studies in yeast indicate a requirement for the ortholog of the SBDS (Shwachman-Bodian-Diamond syndrome) gene that is mutated in the inherited leukemia predisposition disorder Shwachman-Diamond syndrome (SDS). Here, by isolating late cytoplasmic 60S ribosomal subunits from Sbds-deleted mice, we show that SBDS and the GTPase elongation factor-like 1 (EFL1) directly catalyze eIF6 removal in mammalian cells by a mechanism that requires GTP binding and hydrolysis by EFL1 but not phosphorylation of eIF6 Ser 235. Functional analysis of disease-associated missense variants reveals that the essential role of SBDS is to tightly couple GTP hydrolysis by EFL1 on the ribosome to eIF6 release. Furthermore, complementary NMR spectroscopic studies suggest unanticipated mechanistic parallels between this late step in 60S maturation and aspects of bacterial ribosome disassembly. Our findings establish a direct role for SBDS and EFL1 in catalyzing the translational activation of ribosomes in all eukaryotes, and define SDS as a ribosomopathy caused by uncoupling GTP hydrolysis from eIF6 release.

Indexed as

AnimalsBone Marrow DiseasesCatalysisCells, CulturedDisease Models, AnimalEukaryotic Initiation FactorsExocrine Pancreatic InsufficiencyGuanosine TriphosphateHumansHydrolysisLipomatosisLiverMiceMice, Inbred C57BLModels, MolecularMutationEIF6 protein, humanEukaryotic Initiation FactorsGuanosine TriphosphateItgb4bp protein, mousePeptide Initiation FactorsProteinsSBDS protein, humanSbds protein, mouse

Identifiers

PMID21536732
PMCPMC3084026
OpenAlexW2106627064

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.