Evidence map›Paper›PMID 21533667›Full record

ArticleTransgenic research2012

Fidelity of a BAC-EGFP transgene in reporting dynamic expression of IL-7Rα in T cells.

Shuyang Yu, Xinyuan Zhou, Jordy J Hsiao, Dahai Yu, Thomas L Saunders, Hai-Hui Xue

Abstract read
In one paragraph

Article in Transgenic research, 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
0.2field-weighted citation impact, top 43% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed, 3 citations in OpenAlex.

  1. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 3 institutions in 2 countries.

Shuyang YuDepartment of Microbiology, Carver College of Medicine, University of Iowa, Iowa City, IA 52242, USA.
Xinyuan Zhou
Jordy J Hsiao
Dahai Yu
Thomas L Saunders
Hai-Hui Xue
University of Iowa · USChina Medical University · CNUniversity of Michigan–Ann Arbor · US

Funding

Regulation of primary and secondary CD4 and CD8 T cell memoryR37AI042767 · NIAID · UNIVERSITY OF IOWA · PI HARTY, JOHN T · 2008 to 2017
$4.7M
T resident memory in the lungR01AI042767 · NIAID · UNIVERSITY OF IOWA · PI HARTY, JOHN T · 1998 to 2023
$4.4M
Critical roles of GA binding protein in HSC maintenance and ageingR01HL095540 · NHLBI · UNIVERSITY OF IOWA · PI XUE, HAI-HUI · 2009 to 2013
$1.8M
Dynamic regulation of interleukin-7 receptor alpha chainR21AI080966 · NIAID · UNIVERSITY OF IOWA · PI XUE, HAI-HUI · 2010 to 2011
$411k
CD8+ T Cell effector mechanisms against L. monocytogenesR21AI042767 · NIAID · UNIVERSITY OF IOWA · PI HARTY, JOHN T. · 2002 to 2002
$331k
NHLBI NIH HHS R01 HL095540NIAID NIH HHS AI042767NIAID NIH HHS R01 AI042767NIAID NIH HHS R21 AI042767NIAID NIH HHS R21 AI080966NIAID NIH HHS R37 AI042767
6 · The paper itself

Abstract

Interleukin-7 receptor α chain (IL-7Rα)-derived signals are critical for normal T cell development, mature T cell homeostasis, and longevity of memory T cells. IL-7Rα expression in T cells is dynamically regulated at different developmental and antigen-responding stages. However, the molecular mechanism underlying the dynamic regulation is not completely understood. Here we describe generation of a bacterial artificial chromosome (BAC)-based reporter transgenic mouse strain, which contains 210 kb DNA sequence flanking the Il7r locus. We used in vitro validated EGFP reporter and insulator sequences to facilitate the reporter transgene expression. Consistent with endogenous IL-7Rα expression, the BAC transgene was expressed in mature T cells, a portion of natural killer cells but not in mature B cells. In the thymus, the EGFP reporter and endogenous IL-7Rα showed synchronized silencing in CD4(+)CD8(+) double positive stage, were both upregulated in CD4(+) or CD8(+) single positive thymocytes, and both continued to be co-expressed in naïve T cells in the periphery. Upon encountering antigen, the antigen-specific effector CD8(+) T cells downregulated both endogenous IL-7Rα and the EGFP reporter, which were upregulated in synchrony in antigen-specific memory CD8 T cells. These results indicate that the BAC-EGFP transgene reports endogenous IL-7Rα regulation with high fidelity, and further suggest that the 210 kb sequence flanking the Il7r locus contains sufficient genetic information to regulate its expression changes in T lineage cells. Our approach thus represents a critical initial step towards systematic dissection of the cis regulatory elements controlling dynamic IL-7Rα regulation during T cell development and cellular immune responses.

Indexed as

AnimalsB-LymphocytesCD8-Positive T-LymphocytesChromosomes, Artificial, BacterialCloning, MolecularGene Expression RegulationGenes, ReporterGreen Fluorescent ProteinsImmunologic MemoryMiceMice, TransgenicReceptors, Interleukin-7Thymus GlandT-Lymphocytesenhanced green fluorescent proteinGreen Fluorescent Proteinsinterleukin-7 receptor, alpha chainReceptors, Interleukin-7

Identifiers

PMID21533667
PMCPMC3978762
OpenAlexW2035497915

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.