Evidence map›Paper›PMID 21533176›Full record

ArticlePLoS genetics2011

Towards establishment of a rice stress response interactome.

Young-Su Seo, Mawsheng Chern, Laura E Bartley, Muho Han, Ki-Hong Jung, Insuk Lee, Harkamal Walia, Todd Richter, Xia Xu, Peijian Cao and 11 more

Open access · goldAbstract read
In one paragraph

Article in PLoS genetics, 2011. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 103 papers.

0numbers the graph read from it
0cells of the map it votes in
103citing papers in PubMed
9.2field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

103 citing papers in PubMed, 233 citations in OpenAlex.

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  16. iTRAQ based proteomic analysis of rice lines having single or stacked blast resistance genes:Physiology and molecular biology of plants : an international journal of functional plant biology · 2023
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43 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

21 authors at 5 institutions in 3 countries.

Young-Su SeoDepartment of Plant Pathology, University of California Davis, Davis, California, United States of America.
Mawsheng Chern
Laura E Bartley
Muho Han
Ki-Hong Jung
Insuk Lee
Harkamal Walia
Todd Richter
Xia Xu
Peijian Cao
Wei Bai
Rajeshwari Ramanan
Fawn Amonpant
Loganathan Arul
Patrick E Canlas
Randy Ruan
Chang-Jin Park
Xuewei Chen
Sohyun Hwang
Jong-Seong Jeon
Pamela C Ronald
University of California, Davis · USJoint BioEnergy Institute · USKyung Hee University · KRYonsei University · KRCentre for Cellular and Molecular Biology · IN

Funding

NIGMS NIH HHS GM59962
6 · The paper itself

Abstract

Rice (Oryza sativa) is a staple food for more than half the world and a model for studies of monocotyledonous species, which include cereal crops and candidate bioenergy grasses. A major limitation of crop production is imposed by a suite of abiotic and biotic stresses resulting in 30%-60% yield losses globally each year. To elucidate stress response signaling networks, we constructed an interactome of 100 proteins by yeast two-hybrid (Y2H) assays around key regulators of the rice biotic and abiotic stress responses. We validated the interactome using protein-protein interaction (PPI) assays, co-expression of transcripts, and phenotypic analyses. Using this interactome-guided prediction and phenotype validation, we identified ten novel regulators of stress tolerance, including two from protein classes not previously known to function in stress responses. Several lines of evidence support cross-talk between biotic and abiotic stress responses. The combination of focused interactome and systems analyses described here represents significant progress toward elucidating the molecular basis of traits of agronomic importance.

Indexed as

Stress, PhysiologicalAdaptation, PhysiologicalCloning, MolecularGene Expression ProfilingHost-Pathogen InteractionsImmunity, InnateOryzaPhenotypePlant DiseasesPlant ProteinsProtein Interaction MappingTranscription FactorsTwo-Hybrid System TechniquesXanthomonasPlant ProteinsTranscription Factors

Identifiers

PMID21533176
PMCPMC3077385
OpenAlexW2003333370

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.