Evidence map›Paper›PMID 21533114›Full record

ArticlePloS one2011

A small RNA controls expression of the chitinase ChiA in Listeria monocytogenes.

Jesper S Nielsen, Marianne Halberg Larsen, Eva Maria Sternkopf Lillebæk, Teresa M Bergholz, Mie H G Christiansen, Kathryn J Boor, Martin Wiedmann, Birgitte H Kallipolitis

Open access · goldAbstract read
In one paragraph

Article in PloS one, 2011. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 47 papers.

0numbers the graph read from it
0cells of the map it votes in
47citing papers in PubMed
3.3field-weighted citation impact, top 7% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

47 citing papers in PubMed, 72 citations in OpenAlex.

  1. Article
  2. Article
  3. Review
  4. Inactivation ofFrontiers in microbiology · 2023
    Article
  5. Absence of N-Acetylglucosamine Glycosylation onFrontiers in microbiology · 2022
    Article
  6. The Global Regulator CcpA ofFrontiers in microbiology · 2022
    Article
  7. Article
  8. Review
  9. RNA-Mediated Control inFrontiers in microbiology · 2021
    Review
  10. Article
  11. Prevalence of small base-pairing RNAs derived from diverse genomic loci.Biochimica et biophysica acta. Gene regulatory mechanisms · 2020
    Review
  12. Article
  13. Chitin Attenuates Expression ofFrontiers in microbiology · 2020
    Article
  14. Review
  15. AtxA-Controlled Small RNAs ofFrontiers in microbiology · 2020
    Article
  16. Article
  17. Article
  18. Article
  19. Chitinase Expression in Listeria monocytogenes Is Influenced byApplied and environmental microbiology · 2017
    Article
  20. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 3 institutions in 2 countries.

Jesper S NielsenDepartment of Biochemistry and Molecular Biology, University of Southern Denmark, Odense, Denmark.
Marianne Halberg Larsen
Eva Maria Sternkopf Lillebæk
Teresa M Bergholz
Mie H G Christiansen
Kathryn J Boor
Martin Wiedmann
Birgitte H Kallipolitis
University of Southern Denmark · DKCornell University · USUniversity of Copenhagen · DK

Funding

Sigma B and stress response in Listeria monocytogenesR01AI052151 · NIAID · CORNELL UNIVERSITY ITHACA · PI BOOR, KATHRYN J · 2003 to 2012
$2.7M
NIAID NIH HHS R01 AI052151
6 · The paper itself

Abstract

In recent years, more than 60 small RNAs (sRNAs) have been identified in the gram-positive human pathogen Listeria monocytogenes, but their putative roles and mechanisms of action remain largely unknown. The sRNA LhrA was recently shown to be a post-transcriptional regulator of a single gene, lmo0850, which encodes a small protein of unknown function. LhrA controls the translation and degradation of the lmo0850 mRNA by an antisense mechanism, and it depends on the RNA chaperone Hfq for efficient binding to its target. In the present study, we sought to gain more insight into the functional role of LhrA in L. monocytogenes. To this end, we determined the effects of LhrA on global-wide gene expression. We observed that nearly 300 genes in L. monocytogenes are either positively or negatively affected by LhrA. Among these genes, we identified lmo0302 and chiA as direct targets of LhrA, thus establishing LhrA as a multiple target regulator. Lmo0302 encodes a hypothetical protein with no known function, whereas chiA encodes one of two chitinases present in L. monocytogenes. We show here that LhrA acts as a post-transcriptional regulator of lmo0302 and chiA by interfering with ribosome recruitment, and we provide evidence that both LhrA and Hfq act to down-regulate the expression of lmo0302 and chiA. Furthermore, in vitro binding experiments show that Hfq stimulates the base pairing of LhrA to chiA mRNA. Finally, we demonstrate that LhrA has a negative effect on the chitinolytic activity of L. monocytogenes. In marked contrast to this, we found that Hfq has a stimulating effect on the chitinolytic activity, suggesting that Hfq plays multiple roles in the complex regulatory pathways controlling the chitinases of L. monocytogenes.

Indexed as

Base SequenceChitinChitinasesDNA, BacterialGene Expression Regulation, BacterialGene Expression Regulation, EnzymologicHydrolysisListeria monocytogenesMolecular Sequence DataPromoter Regions, GeneticReverse Transcriptase Polymerase Chain ReactionRNAChitinchitinase ChiAChitinasesDNA, BacterialRNA

Identifiers

PMID21533114
PMCPMC3078929
OpenAlexW2131876145

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.