Evidence map›Paper›PMID 21533037›Full record

ArticlePloS one2011

Protein phosphatase-1 activates CDK9 by dephosphorylating Ser175.

Tatiana Ammosova, Yuri Obukhov, Alexander Kotelkin, Denitra Breuer, Monique Beullens, Victor R Gordeuk, Mathieu Bollen, Sergei Nekhai

Open access · goldAbstract read
In one paragraph

Article in PloS one, 2011. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 38 papers.

0numbers the graph read from it
0cells of the map it votes in
38citing papers in PubMed
2.5field-weighted citation impact, top 10% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

38 citing papers in PubMed, 44 citations in OpenAlex.

  1. Trial
  2. Article
  3. Article
  4. Article
  5. Article
  6. Structural basis of Cdk7 activation by dual T-loop phosphorylation.bioRxiv : the preprint server for biology · 2024
    Article
  7. Review
  8. Article
  9. Review
  10. Review
  11. P-TEFb as A Promising Therapeutic Target.Molecules (Basel, Switzerland) · 2020
    Review
  12. Targeting HIV-1 proviral transcription.Current opinion in virology · 2019
    Review
  13. Article
  14. Article
  15. Article
  16. Article
  17. Review
  18. Article
  19. The mTOR Complex Controls HIV Latency.Cell host & microbe · 2016
    Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 2 institutions in 2 countries.

Tatiana AmmosovaCenter for Sickle Cell Disease, Howard University, Washington, DC, United States of America.
Yuri Obukhov
Alexander Kotelkin
Denitra Breuer
Monique Beullens
Victor R Gordeuk
Mathieu Bollen
Sergei Nekhai
Howard University · USKU Leuven · BE

Funding

STRUCTURAL/FUNCTIONAL CHARACTERIZATION OF AMINOGLYCOSIDEG12RR003048 · NCRR · HOWARD UNIVERSITY · PI SOUTHERLAND, WILLIAM M. · 1985 to 2011
$19.0M
UVDM01RR010284 · NCRR · HOWARD UNIVERSITY · PI TAYLOR, ROBERT E. · 1996 to 2010
$17.4M
Howard University Research Scientist AwardR25HL003679 · NHLBI · HOWARD UNIVERSITY · PI NEKHAI, SERGEI · 2005 to 2009
$1.7M
Regulation of HIV-1 Transcription by CDK2SC1GM082325 · NIGMS · HOWARD UNIVERSITY · PI NEKHAI, SERGEI · 2008 to 2011
$1.2M
REGULATION OF HIV-1 TRANSCRIPTION BY CDK2R21AI056973 · NIAID · HOWARD UNIVERSITY · PI NEKHAI, SERGEI · 2003 to 2004
$494k
NCRR NIH HHS 2G12RR003048NCRR NIH HHS 2M01 RR10284NCRR NIH HHS G12 RR003048NCRR NIH HHS M01 RR010284NHLBI NIH HHS 2 R25 HL003679-08NHLBI NIH HHS R25 HL003679NIAID NIH HHS R21 AI056973NIGMS NIH HHS 1SC1GM082325-01NIGMS NIH HHS SC1 GM082325
6 · The paper itself

Abstract

The cyclin-dependent kinase CDK9/cyclin T1 induces HIV-1 transcription by phosphorylating the carboxyterminal domain (CTD) of RNA polymerase II (RNAPII). CDK9 activity is regulated by protein phosphatase-1 (PP1) which was previously shown to dephosphorylate CDK9 Thr186. Here, we analyzed the effect of PP1 on RNAPII phosphorylation and CDK9 activity. The selective inhibition of PP1 by okadaic acid and by NIPP1 inhibited phosphorylation of RNAPII CTD in vitro and in vivo. Expression of the central domain of NIPP1 in cultured cells inhibited the enzymatic activity of CDK9 suggesting its activation by PP1. Comparison of dephosphorylation of CDK9 phosphorylated by ((32)P) in vivo and dephosphorylation of CDK9's Thr186 analyzed by Thr186 phospho-specific antibodies, indicated that a residue other than Thr186 might be dephosphorylated by PP1. Analysis of dephosphorylation of phosphorylated peptides derived from CDK9's T-loop suggested that PP1 dephosphorylates CDK9 Ser175. In cultured cells, CDK9 was found to be phosphorylated on Ser175 as determined by combination of Hunter 2D peptide mapping and LC-MS analysis. CDK9 S175A mutant was active and S175D--inactive, and dephosphorylation of CDK9's Ser175 upregulated HIV-1 transcription in PP1-dependent manner. Collectively, our results point to CDK9 Ser175 as novel PP1-regulatory site which dephosphorylation upregulates CDK9 activity and contribute to the activation of HIV-1 transcription.

Indexed as

Amino Acid SequenceCell LineCyclin-Dependent Kinase 9Electrophoresis, Polyacrylamide GelEnzyme ActivationHIV-1HumansMass SpectrometryMolecular Sequence DataMutationPeptide MappingPhosphorylationProtein Phosphatase 1SerineTranscription, GeneticCDK9 protein, humanCyclin-Dependent Kinase 9Protein Phosphatase 1Serine

Identifiers

PMID21533037
PMCPMC3080879
OpenAlexW2074714698

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.