Evidence map›Paper›PMID 21527998›Full record

ArticleMolecular vision2011

Sequence variants in COL4A1 and COL4A2 genes in Ecuadorian families with keratoconus.

Justyna A Karolak, Karolina Kulinska, Dorota M Nowak, Jose A Pitarque, Andrea Molinari, Malgorzata Rydzanicz, Bassem A Bejjani, Marzena Gajecka

Open access · greenAbstract read
In one paragraph

Article in Molecular vision, 2011. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 15 papers.

0numbers the graph read from it
0cells of the map it votes in
15citing papers in PubMed
1.2field-weighted citation impact, top 25% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

15 citing papers in PubMed, 34 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Article
  5. The Underlying Relationship between Keratoconus and Down Syndrome.International journal of molecular sciences · 2022
    Review
  6. Article
  7. Article
  8. Review
  9. Article
  10. Genomic strategies to understand causes of keratoconus.Molecular genetics and genomics : MGG · 2017
    Review
  11. Article
  12. The pathogenesis of keratoconus.Eye (London, England) · 2014
    Review
  13. Genetics of keratoconus: where do we stand?Journal of ophthalmology · 2014
    Review
  14. Review
  15. Gene therapy in keratoconus.Oman journal of ophthalmology
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 1 institution in 1 country.

Justyna A KarolakInstitute of Human Genetics, Polish Academy of Sciences, Poznan, Poland.
Karolina Kulinska
Dorota M Nowak
Jose A Pitarque
Andrea Molinari
Malgorzata Rydzanicz
Bassem A Bejjani
Marzena Gajecka
Institute of Human Genetics · PL

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

purposeKeratoconus (KTCN) is a non-inflammatory, usually bilateral disorder of the eye which results in the conical shape and the progressive thinning of the cornea. Several studies have suggested that genetic factors play a role in the etiology of the disease. Several loci were previously described as possible candidate regions for familial KTCN; however, no causative mutations in any genes have been identified for any of these loci. The purpose of this study was to evaluate role of the collagen genes collagen type IV, alpha-1 (COL4A1) and collagen type IV, alpha-2 (COL4A2) in KTCN in Ecuadorian families.

methodsCOL4A1 and COL4A2 in 15 Ecuadorian KTCN families were examined with polymerase chain reaction amplification, and direct sequencing of all exons, promoter and intron-exon junctions was performed.

resultsScreening of COL4A1 and COL4A2 revealed numerous alterations in coding and non-coding regions of both genes. We detected three missense substitutions in COL4A1: c.19G>C (Val7Leu), c.1663A>C (Thr555Pro), and c.4002A>C (Gln1334His). Five non-synonymous variants were identified in COL4A2: c.574G>T (Val192Phe), c.1550G>A (Arg517Lys), c.2048G>C (Gly683Ala), c.2102A>G (Lys701Arg), and c.2152C>T (Pro718Ser). None of the identified sequence variants completely segregated with the affected phenotype. The Gln1334His variant was possibly damaging to protein function and structure.

conclusionsThis is the first mutation screening of COL4A1 and COL4A2 genes in families with KTCN and linkage to a locus close to these genes. Analysis of COL4A1 and COL4A2 revealed no mutations indicating that other genes are involved in KTCN causation in Ecuadorian families.

Indexed as

Amino Acid SequenceCase-Control StudiesCollagen Type IVCorneaEcuadorFemaleGene Expression ProfilingHaplotypesHumansKeratoconusMaleMolecular Sequence DataMutationPedigreePhenotypePolymorphism, Single NucleotideCOL4A1 protein, humanCOL4A2 protein, humanCollagen Type IV

Identifiers

PMID21527998
PMCPMC3081799
OpenAlexW1585013756

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.