Evidence map›Paper›PMID 21527871›Full record

ArticleTransplantation2011

Proteomic analysis reveals innate immune activity in intestinal transplant dysfunction.

Anjuli R Kumar, Xiaoxiao Li, James F Leblanc, Douglas G Farmer, David Elashoff, Jonathan Braun, David Ziring

Abstract read
In one paragraph

Article in Transplantation, 2011. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

7 citing papers in PubMed.

  1. Article
  2. Review
  3. Article
  4. Article
  5. Article
  6. The concept of gut rehabilitation and the future of visceral transplantation.Nature reviews. Gastroenterology & hepatology · 2015
    Review
  7. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors.

Anjuli R KumarDepartment of Pediatric Gastroenterology, David Geffen School of Medicine at University of California, Los Angeles, CA, USA.
Xiaoxiao Li
James F Leblanc
Douglas G Farmer
David Elashoff
Jonathan Braun
David Ziring

Funding

Women's CancersP30CA016042 · NCI · UNIVERSITY OF CALIFORNIA LOS ANGELES · PI Samuel Wheeler French · 1985 to 2026
$134.5M
UCLA Clinical and Translational Science InstituteUL1TR000124 · NCATS · UNIVERSITY OF CALIFORNIA LOS ANGELES · PI DUBINETT, STEVEN M. · 2012 to 2015
$57.0M
Using polygenic scores to enhance both variant discovery, and understanding of functional consequences of genetic variation in IBD.P01DK046763 · NIDDK · CEDARS-SINAI MEDICAL CENTER · PI TARGAN, STEPHAN R. · 1992 to 2020
$31.1M
UCLA CLINICAL AND TRANSLATIONAL SCIENCE INSTITUTEUL1RR033176 · NCRR · UNIVERSITY OF CALIFORNIA LOS ANGELES · PI DUBINETT, STEVEN M. · 2011 to 2011
$15.5M
HUMAN AND MOLECULAR DEVELOPMENT TRAINING PROGRAMT32HD007512 · NICHD · UNIVERSITY OF CALIFORNIA LOS ANGELES · PI DEVASKAR, SHERIN U · 1998 to 2012
$2.6M
Identifying Microorganisms involved in Human Health and Disease ProcessesR01AI078885 · NIAID · UNIVERSITY OF CALIFORNIA RIVERSIDE · PI BORNEMAN, JAMES · 2008 to 2011
$1.4M
NCATS NIH HHS UL1 TR000124NCI NIH HHS CA016042NCI NIH HHS P30 CA016042NCRR NIH HHS UL1 RR033176NIAID NIH HHS R01 AI078885NICHD NIH HHS 2 T32 HD007512-11NICHD NIH HHS T32 HD007512NIDDK NIH HHS P01 DK046763
6 · The paper itself

Abstract

backgroundMany patients with intestinal failure require intestinal transplantation (ITx) to survive. Acute cellular rejection poses a challenge in ITx because its biologic components are incompletely understood. New methodologies for its integrative and longitudinal analysis are needed.

methodsIn this study, we characterized episodes of acute cellular rejection in ITx recipients using a noninvasive proteomic analysis. Ostomy effluent was obtained from all patients undergoing ITx at University of California, Los Angeles from July 2008 to September 2009 during surveillance endoscopies in the first 8 weeks post-ITx. Effluent was analyzed using 17-plex Luminex technology and matrix-assisted laser desorption/ionization proteomics.

resultsOf 56 ostomy effluent samples from 17 ITx recipients, 14% developed biopsy-proven rejection at a median of 25 days post-ITx. Six had mild rejection, two were indeterminate for rejection, and no graft loss was seen in the first 3 months posttransplantation. Effluent levels of five innate immune cytokines were elevated in the posttransplantation phase: granulocyte colony-stimulating factor, interleukin-8, tissue necrosis factor-α, interleukin-1β, and interferon-γ. Proteomic analysis revealed 17 protein features differentially seen in rejection, two identified as human neutrophil peptide 1 and 2. This was confirmed by the presence of human neutrophil peptide-positive lamina propria neutrophils in biopsy tissue samples.

conclusionsProteomic and cytokine analysis of ostomy effluents suggests an early and unappreciated role of innate immune activation during rejection.

Indexed as

Immunity, InnateAdultalpha-DefensinsChildCytokinesEnterostomyGraft RejectionGranulocyte Colony-Stimulating FactorHumansImmunohistochemistryInterferon-gammaInterleukin-1betaInterleukin-8IntestinesProteomicsTumor Necrosis Factor-alphaalpha-DefensinsCXCL8 protein, humanCytokinesGranulocyte Colony-Stimulating Factorhuman neutrophil peptide 1human neutrophil peptide 2Interferon-gammaInterleukin-1betaInterleukin-8Tumor Necrosis Factor-alpha

Identifiers

PMID21527871
PMCPMC3461584

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.