Evidence map›Paper›PMID 21527722›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2011

Cysteine shotgun-mass spectrometry (CS-MS) reveals dynamic sequence of protein structure changes within mutant and stressed cells.

Christine C Krieger, Xiuli An, Hsin-Yao Tang, Narla Mohandas, David W Speicher, Dennis E Discher

Abstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2011. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 18 papers.

0numbers the graph read from it
0cells of the map it votes in
18citing papers in PubMed
2.4field-weighted citation impact, top 12% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

18 citing papers in PubMed, 42 citations in OpenAlex.

  1. Article
  2. Review
  3. Article
  4. Article
  5. Article
  6. Review
  7. Axonal cytomechanics in neuronal development.Journal of biosciences · 2020
    Review
  8. Article
  9. Quantifying forces in cell biology.Nature cell biology · 2017
    Review
  10. Review
  11. High content image analysis of focal adhesion-dependent mechanosensitive stem cell differentiation.Integrative biology : quantitative biosciences from nano to macro · 2016
    Article
  12. Article
  13. Article
  14. Review
  15. Article
  16. Spectrin-based skeleton as an actor in cell signaling.Cellular and molecular life sciences : CMLS · 2012
    Review
  17. Article
  18. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 3 institutions in 1 country.

Christine C KriegerMolecular and Cell Biophysics Lab, University of Pennsylvania, Philadelphia, PA 19104, USA.
Xiuli An
Hsin-Yao Tang
Narla Mohandas
David W Speicher
Dennis E Discher
The Wistar Institute · USNew York Blood Center · USUniversity of Pennsylvania · US

Funding

YEAST MEMBRANE CYTOSKELETONP01DK032094 · NIDDK · UNIVERSITY OF CALIFORNIA SAN FRANCISCO · PI NARLA, MOHANDAS · 1987 to 2021
$26.7M
Membrane Proteins of Normal and Abnormal Red CellsR01HL038794 · NHLBI · WISTAR INSTITUTE · PI SPEICHER, DAVID W. · 1987 to 2013
$5.1M
SPECTRIN EXTENSIBILITY and CD47 CONNECTIONS &FUNCTIONR01HL062352 · NHLBI · UNIVERSITY OF PENNSYLVANIA · PI DISCHER, DENNIS E. · 1999 to 2012
$3.3M
NHLBI NIH HHS R01 HL038794NHLBI NIH HHS R01HL038794NHLBI NIH HHS R01 HL062352NHLBI NIH HHS R01HL062352NIDDK NIH HHS P01 DK032094NIDDK NIH HHS P01DK032094
6 · The paper itself

Abstract

Questions of if and when protein structures change within cells pervade biology and include questions of how the cytoskeleton sustains stresses on cells--particularly in mutant versus normal cells. Cysteine shotgun labeling with fluorophores is analyzed here with mass spectrometry of the spectrin-actin membrane skeleton in sheared red blood cell ghosts from normal and diseased mice. Sheared samples are compared to static samples at 37 °C in terms of cell membrane intensity in fluorescence microscopy, separated protein fluorescence, and tryptic peptide modification in liquid chromatography-tandem mass spectrometry (LC-MS/MS). Spectrin labeling proves to be the most sensitive to shear, whereas binding partners ankyrin and actin exhibit shear thresholds in labeling and both the ankyrin-binding membrane protein band 3 and the spectrin-actin stabilizer 4.1R show minimal differential labeling. Cells from 4.1R-null mice differ significantly from normal in the shear-dependent labeling of spectrin, ankyrin, and band 3: Decreased labeling of spectrin reveals less stress on the mutant network as spectrin dissociates from actin. Mapping the stress-dependent labeling kinetics of α- and β-spectrin by LC-MS/MS identifies Cys in these antiparallel chains that are either force-enhanced or force-independent in labeling, with structural analyses indicating the force-enhanced sites are sequestered either in spectrin's triple-helical domains or in interactions with actin or ankyrin. Shear-sensitive sites identified comprehensively here in both spectrin and ankyrin appear consistent with stress relief through forced unfolding followed by cytoskeletal disruption.

Indexed as

CysteineMolecular Dynamics SimulationActinsAnimalsCytoskeletonErythrocyte MembraneMass SpectrometryMiceMutationProtein ConformationProtein FoldingProteinsSpectrinStress, PhysiologicalActinsCysteineProteinsSpectrin

Identifiers

PMID21527722
PMCPMC3100976
OpenAlexW2126184168

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.