ArticlePlant physiology2011
Regulatory hotspots are associated with plant gene expression under varying soil phosphorus supply in Brassica rapa.
Article in Plant physiology, 2011. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 26 papers, 1 of them a synthesis that pooled it.
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The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.
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Who cites it
26 citing papers in PubMed, 1 synthesis or guideline pooled it, 64 citations in OpenAlex.
- QTL meta-analysis of root traits in Brassica napus under contrasting phosphorus supply in two growth systems.Scientific reports · 2016Pooled it
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- Molecular mechanisms underpinning quantitative resistance toFrontiers in plant science · 2023Article
- Integrating Phenotypic and Gene Expression Linkage Mapping to Dissect Rust Resistance in Chickling Pea.Frontiers in plant science · 2022Article
- Chromosomal characteristics of salt stress heritable gene expression in the rice genome.BMC genomic data · 2021Article
- Detecting selection with a genetic cross.Proceedings of the National Academy of Sciences of the United States of America · 2020Article
- QTL and candidate genes associated with leaf anion concentrations in response to phosphate supply in Arabidopsis thaliana.BMC plant biology · 2019Article
- Integrating transcriptomic network reconstruction and eQTL analyses reveals mechanistic connections between genomic architecture and Brassica rapa development.PLoS genetics · 2019Article
- Kernel size-related genes revealed by an integrated eQTL analysis during early maize kernel development.The Plant journal : for cell and molecular biology · 2019Article
- Early Responses ofFrontiers in plant science · 2019Article
- Time-course expression QTL-atlas of the global transcriptional response of wheat to Fusarium graminearum.Plant biotechnology journal · 2017Article
- Using RNA-Seq for Genomic Scaffold Placement, Correcting Assemblies, and Genetic Map Creation in a CommonG3 (Bethesda, Md.) · 2017Article
- A Cross-Species Gene Expression Marker-Based Genetic Map and QTL Analysis in Bambara Groundnut.Genes · 2017Article
- eQTL Regulating Transcript Levels Associated with Diverse Biological Processes in Tomato.Plant physiology · 2016Article
- Envirotyping for deciphering environmental impacts on crop plants.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2016Review
- A Systems Genetics Approach Identifies Gene Regulatory Networks Associated with Fatty Acid Composition in Brassica rapa Seed.Plant physiology · 2016Article
- RNA-Seq analysis identifies genes associated with differential reproductive success under drought-stress in accessions of wild barley Hordeum spontaneum.BMC plant biology · 2015Article
- Crop epigenetics and the molecular hardware of genotype × environment interactions.Frontiers in plant science · 2015Review
- Genetical and comparative genomics of Brassica under altered Ca supply identifies Arabidopsis Ca-transporter orthologs.The Plant cell · 2014Article
Corrections and comments
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Authors and funding
12 authors at 4 institutions in 1 country.
Funding
Abstract
Gene expression is a quantitative trait that can be mapped genetically in structured populations to identify expression quantitative trait loci (eQTL). Genes and regulatory networks underlying complex traits can subsequently be inferred. Using a recently released genome sequence, we have defined cis- and trans-eQTL and their environmental response to low phosphorus (P) availability within a complex plant genome and found hotspots of trans-eQTL within the genome. Interval mapping, using P supply as a covariate, revealed 18,876 eQTL. trans-eQTL hotspots occurred on chromosomes A06 and A01 within Brassica rapa; these were enriched with P metabolism-related Gene Ontology terms (A06) as well as chloroplast- and photosynthesis-related terms (A01). We have also attributed heritability components to measures of gene expression across environments, allowing the identification of novel gene expression markers and gene expression changes associated with low P availability. Informative gene expression markers were used to map eQTL and P use efficiency-related QTL. Genes responsive to P supply had large environmental and heritable variance components. Regulatory loci and genes associated with P use efficiency identified through eQTL analysis are potential targets for further characterization and may have potential for crop improvement.
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Registered trials
Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.