Evidence map›Paper›PMID 21526160›Full record

ArticlePloS one2011

The AP-1 binding sites located in the pol gene intragenic regulatory region of HIV-1 are important for viral replication.

Laurence Colin, Nathalie Vandenhoudt, Stéphane de Walque, Benoît Van Driessche, Anna Bergamaschi, Valérie Martinelli, Thomas Cherrier, Caroline Vanhulle, Allan Guiguen, Annie David and 5 more

Open access · goldAbstract read
In one paragraph

Article in PloS one, 2011. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 21 papers.

0numbers the graph read from it
0cells of the map it votes in
21citing papers in PubMed
0.9field-weighted citation impact, top 29% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

21 citing papers in PubMed, 34 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Review
  6. Article
  7. Article
  8. Review
  9. Review
  10. Article
  11. Article
  12. Article
  13. Review
  14. Article
  15. Article
  16. Article
  17. Article
  18. Review
  19. Review
  20. Human serum protein enhances HIV-1 replication and up-regulates the transcription factor AP-1.Proceedings of the National Academy of Sciences of the United States of America · 2012
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

15 authors at 5 institutions in 2 countries.

Laurence ColinLaboratoire de Virologie Moléculaire, Institut de Biologie et de Médecine Moléculaires, Université Libre de Bruxelles, Gosselies, Belgium.
Nathalie Vandenhoudt
Stéphane de Walque
Benoît Van Driessche
Anna Bergamaschi
Valérie Martinelli
Thomas Cherrier
Caroline Vanhulle
Allan Guiguen
Annie David
Arsène Burny
Georges Herbein
Gianfranco Pancino
Olivier Rohr
Carine Van Lint
Institute of Pathology and Genetics · BEInstitut Pasteur · FRUniversité de Strasbourg · FRUniversité Libre de Bruxelles · BEBiologie Tissulaire et Ingénierie Thérapeutique · FR

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Our laboratory has previously identified an important intragenic region in the human immunodeficiency virus type 1 (HIV-1) genome, whose complete functional unit is composed of the 5103 fragment, the DNaseI-hypersensitive site HS7 and the 5105 fragment. These fragments (5103 and 5105) both exhibit a phorbol 12-myristate 13-acetate (PMA)-inducible enhancer activity on the herpes simplex virus thymidine kinase promoter. Here, we characterized the three previously identified AP-1 binding sites of fragment 5103 by showing the PMA-inducible in vitro binding and in vivo recruitment of c-Fos, JunB and JunD to this fragment located at the end of the pol gene. Functional analyses demonstrated that the intragenic AP-1 binding sites are fully responsible for the PMA-dependent enhancer activity of fragment 5103. Moreover, infection of T-lymphoid Jurkat and promonocytic U937 cells with wild-type and mutant viruses demonstrated that mutations of the intragenic AP-1 sites individually or in combination altered HIV-1 replication. Importantly, mutations of the three intragenic AP-1 sites led to a decreased in vivo recruitment of RNA polymerase II to the viral promoter, strongly supporting that the deleterious effect of these mutations on viral replication occurs, at least partly, at the transcriptional level. Single-round infections of monocyte-derived macrophages confirmed the importance of intragenic AP-1 sites for HIV-1 infectivity.

Indexed as

Base SequenceBinding SitesEnhancer Elements, GeneticGenes, DominantGenes, polHIV-1HumansJurkat CellsMacrophagesMolecular Sequence DataMonocytesPoint MutationProtein BindingProto-Oncogene Proteins c-fosProto-Oncogene Proteins c-junRegulatory Sequences, Nucleic AcidJunD protein, humanProto-Oncogene Proteins c-fosProto-Oncogene Proteins c-junRNA Polymerase IItat Gene Products, Human Immunodeficiency VirusTetradecanoylphorbol AcetateTranscription Factor AP-1

Identifiers

PMID21526160
PMCPMC3079759
OpenAlexW2173020252

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.