Evidence map›Paper›PMID 21519904›Full record

ArticleJournal of biomolecular NMR2011

Solution structure, dynamics and thermodynamics of the three SH3 domains of CD2AP.

Jose L Ortega Roldan, Martin Blackledge, Nico A J van Nuland, Ana I Azuaga

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In one paragraph

Article in Journal of biomolecular NMR, 2011. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 9 papers.

0numbers the graph read from it
0cells of the map it votes in
9citing papers in PubMed
1.0field-weighted citation impact, top 28% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

9 citing papers in PubMed, 16 citations in OpenAlex.

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  4. Capping protein regulators fine-tune actin assembly dynamics.Nature reviews. Molecular cell biology · 2014
    Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 3 institutions in 3 countries.

Jose L Ortega RoldanDepartamento de Química Física e Instituto de Biotecnología, Universidad de Granada, Fuentenueva s/n, Spain.
Martin Blackledge
Nico A J van Nuland
Ana I Azuaga
Universidad de Granada · ESCentre National de la Recherche Scientifique · FRVIB-VUB Center for Structural Biology · BE

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

CD2 associated protein (CD2AP) is an adaptor protein that plays an important role in cell to cell union needed for the kidney function. It contains three N-terminal SH3 domains that are able to interact among others with CD2, ALIX, c-Cbl and Ubiquitin. To understand the role of the individual SH3 domains of this adaptor protein we have performed a complete structural, thermodynamic and dynamic characterization of the separate domains using NMR and DSC. The energetic contributions to the stability and the backbone dynamics have been related to the structural features of each domain using the structure-based FoldX algorithm. We have found that the N-terminal SH3 domain of both adaptor proteins CD2AP and CIN85 are the most stable SH3 domains that have been studied until now. This high stability is driven by a more extensive network of intra-molecular interactions. We believe that this increased stabilization of N-terminal SH3 domains in adaptor proteins is crucial to maintain the necessary conformation to establish the proper interactions critical for the recruitment of their natural targets.

Indexed as

src Homology DomainsThermodynamicsAdaptor Proteins, Signal TransducingAmino Acid SequenceCytoskeletal ProteinsDeuterium Exchange MeasurementModels, MolecularMolecular Dynamics SimulationMolecular Sequence DataProtein ConformationProtein StabilityRecombinant ProteinsSequence AlignmentSolutionsAdaptor Proteins, Signal TransducingCD2-associated proteinCytoskeletal ProteinsRecombinant ProteinsSolutions

Identifiers

PMID21519904
OpenAlexW2043242315

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.