Evidence map›Paper›PMID 21518907›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2011

Probing the SecYEG translocation pore size with preproteins conjugated with sizable rigid spherical molecules.

Francesco Bonardi, Erik Halza, Martin Walko, François Du Plessis, Nico Nouwen, Ben L Feringa, Arnold J M Driessen

Open access · greenAbstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2011. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 38 papers.

0numbers the graph read from it
0cells of the map it votes in
38citing papers in PubMed
4.4field-weighted citation impact, top 5% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

38 citing papers in PubMed, 73 citations in OpenAlex.

  1. Article
  2. Article
  3. A widespread family of ribosomal peptide metallophores involved in bacterial adaptation to metal stress.Proceedings of the National Academy of Sciences of the United States of America · 2024
    Article
  4. Article
  5. Conformational Control of [2]Rotaxane by Hydrogen Bond.The Journal of organic chemistry · 2022
    Article
  6. Article
  7. Review
  8. The Dynamic SecYEG Translocon.Frontiers in molecular biosciences · 2021
    Review
  9. Article
  10. Article
  11. Article
  12. Review
  13. Article
  14. Review
  15. Article
  16. Article
  17. Article
  18. Article
  19. Review
  20. Palladium-Catalyzed Triarylation of spAdvanced synthesis & catalysis · 2018
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 1 institution in 1 country.

Francesco BonardiMolecular Microbiology, Groningen Biomolecular Sciences and Biotechnology Institute and Zernike Institute for Advanced Materials, Nijenborgh 7, 9747 AG Groningen, The Netherlands.
Erik Halza
Martin Walko
François Du Plessis
Nico Nouwen
Ben L Feringa
Arnold J M Driessen
University of Groningen · NL

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Protein translocation in Escherichia coli is mediated by the translocase that in its minimal form consists of the protein-conducting channel SecYEG, and the motor protein, SecA. SecYEG forms a narrow pore in the membrane that allows passage of unfolded proteins only. Molecular dynamics simulations suggest that the maximal width of the central pore of SecYEG is limited to . To access the functional size of the SecYEG pore, the precursor of outer membrane protein A was modified with rigid spherical tetraarylmethane derivatives of different diameters at a unique cysteine residue. SecYEG allowed the unrestricted passage of the precursor of outer membrane protein A conjugates carrying tetraarylmethanes with diameters up to , whereas a sized molecule blocked the translocation pore. Translocation of the protein-organic molecule hybrids was strictly proton motive force-dependent and occurred at a single pore. With an average diameter of an unfolded polypeptide chain of , the pore accommodates structures of at least , which is vastly larger than the predicted maximal width of a single pore by molecular dynamics simulations.

Indexed as

Adenosine TriphosphatasesBacterial ProteinsEscherichia coliEscherichia coli ProteinsMembrane Transport ProteinsModels, MolecularMolecular Dynamics SimulationMolecular StructureProtein ConformationProtein PrecursorsProtein TransportProton-Motive ForceSecA ProteinsSEC Translocation ChannelsAdenosine TriphosphatasesBacterial ProteinsEscherichia coli ProteinsMembrane Transport ProteinsProtein PrecursorsSecA ProteinsSEC Translocation Channels

Identifiers

PMID21518907
PMCPMC3093497
OpenAlexW2159165235

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.