Evidence map›Paper›PMID 21516334›Full record

ArticleMolecular genetics and genomics : MGG2011

Molecular characterization and genomic mapping of the pathogenesis-related protein 1 (PR-1) gene family in hexaploid wheat (Triticum aestivum L.).

Shunwen Lu, Timothy L Friesen, Justin D Faris

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Article in Molecular genetics and genomics : MGG, 2011. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 31 papers.

0numbers the graph read from it
0cells of the map it votes in
31citing papers in PubMed
5.7field-weighted citation impact, top 5% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

31 citing papers in PubMed, 69 citations in OpenAlex.

  1. Article
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  15. TaPR1 Interacts With TaTLP1Frontiers in plant science · 2022
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  17. Review
  18. Effectors ofInternational journal of molecular sciences · 2021
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors at 2 institutions in 1 country.

Shunwen LuUSDA-ARS, Cereal Crops Research Unit, Northern Crop Science Laboratory, Fargo, ND 58102-2765, USA. Shunwen.Lu@ars.usda.gov
Timothy L Friesen
Justin D Faris
Edward T. Schafer Agricultural Research Center · USAgricultural Research Service · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The group 1 pathogenesis-related (PR-1) proteins, known as hallmarks of defense pathways, are encoded by multigene families in plants as evidenced by the presence of 22 and 32 PR-1 genes in the finished Arabidopsis and rice genomes, respectively. Here, we report the initial characterization and mapping of 23 PR-1-like (TaPr-1) genes in hexaploid wheat (Triticum aestivum L.), which possesses one of the largest (>16,000 megabases) genomes among monocot crop plants. Sequence analysis revealed that the 23 TaPr-1 genes all contain intron-free open reading frames that encode a signal peptide at the N-terminus and a conserved PR-1-like domain. Phylogenetic analysis indicated that TaPr-1 genes form three major monophyletic groups along with their counterparts in other monocots; each group consists of genes encoding basic, basic with a C-terminal extension, and acidic PR-1 proteins, respectively, suggesting diversity and conservation of PR-1 gene functions in monocot plants. Mapping analysis assisted by untranslated region-specified discrimination (USD) markers and various cytogenetic stocks located the 23 TaPr-1 genes to seven different chromosomes, with the majority mapping to chromosomes of homoeologous groups 5 and 7. Reverse transcriptase (RT)-PCR analysis revealed that 12 TaPr-1 genes were induced or up-regulated upon pathogen challenge. Together, this study provides insights to the origin, evolution, homoeologous relationships, and expression patterns of the TaPr-1 genes. The data presented provide critical information for further genome-wide characterization of the wheat PR-1 gene family and the USD markers developed will facilitate genetic and functional analysis of PR-1 genes associated with plant defense and/or other important traits.

Indexed as

Chromosome MappingGenome, PlantAnti-Infective AgentsGenes, PlantPlant ProteinsTriticumAnti-Infective Agentspathogenesis-related proteins, plantPlant Proteins

Identifiers

PMID21516334
OpenAlexW2043297315

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.