Evidence map›Paper›PMID 21515774›Full record

ArticleJournal of bacteriology2011

Rapid divergence of two classes of Haemophilus ducreyi.

Emily E Ricotta, Nan Wang, Robin Cutler, Jeffrey G Lawrence, Tricia L Humphreys

Open access · greenAbstract read
In one paragraph

Article in Journal of bacteriology, 2011. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 11 papers.

0numbers the graph read from it
0cells of the map it votes in
11citing papers in PubMed
0.7field-weighted citation impact, top 30% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

11 citing papers in PubMed, 17 citations in OpenAlex.

  1. Article
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  3. Multiple Class I and Class II Haemophilus ducreyi Strains Cause Cutaneous Ulcers in Children on an Endemic Island.Clinical infectious diseases : an official publication of the Infectious Diseases Society of America · 2018
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 3 institutions in 1 country.

Emily E RicottaDepartment of Biology, Allegheny College, Meadville, PA 16335, USA.
Nan Wang
Robin Cutler
Jeffrey G Lawrence
Tricia L Humphreys
Grinnell College · USAllegheny College · USUniversity of Pittsburgh · US

Funding

Inferring the Roadmap of Bacterial Gene TransferR01GM078092 · NIGMS · UNIVERSITY OF PITTSBURGH AT PITTSBURGH · PI LAWRENCE, JEFFREY G · 2006 to 2009
$655k
NIGMS NIH HHS GM078092NIGMS NIH HHS R01 GM078092
6 · The paper itself

Abstract

Haemophilus ducreyi, the etiologic agent of chancroid, expresses variants of several key virulence factors. While previous reports suggested that H. ducreyi strains formed two clonal populations, the differences between, and diversity within, these populations were unclear. To assess their variability, we examined sequence diversity at 11 H. ducreyi loci, including virulence and housekeeping genes, augmenting published data sets with PCR-amplified genes to acquire data for at least 10 strains at each locus. While sequences from all 11 loci place strains into two distinct groups, there was very little variation within each group. The difference between alleles of the two groups was variable and large at 3 loci encoding surface-exposed proteins (0.4 < K(S) < 1.3, where K(S) is divergence at synonymous sites) but consistently small at genes encoding cytoplasmic or periplasmic proteins (K(S) < 0.09). The data suggest that the two classes have recently diverged, that recombination has introduced variant alleles into at least 3 distinct loci, and that these alleles have been confined to one of the two classes. In addition, recombination is evident among alleles within, but not between, classes. Rather than clones of the same species, these properties indicate that the two classes may form distinct species.

Indexed as

Genetic VariationAntigens, BacterialBacterial ProteinsBase SequenceGene Expression Regulation, BacterialHaemophilus ducreyiHaemophilus InfectionsHaemophilus VaccinesHumansMolecular Sequence DataPhylogenyTime FactorsAntigens, BacterialBacterial ProteinsHaemophilus Vaccines

Identifiers

PMID21515774
PMCPMC3133207
OpenAlexW2004528715

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.