ArticleApplied and environmental microbiology2011
Genomic analysis of Xanthomonas oryzae isolates from rice grown in the United States reveals substantial divergence from known X. oryzae pathovars.
Article in Applied and environmental microbiology, 2011. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 44 papers, 1 of them a synthesis that pooled it.
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Who cites it
44 citing papers in PubMed, 1 synthesis or guideline pooled it, 83 citations in OpenAlex.
- Cross-tolerance as an ecological paradox: a hypothesis-driven systematic review of Leersia hexandra as both remediator and pathogen reservoir.Oecologia · 2026Pooled it
- Genomic insights into the TAL effector diversity and SWEET gene targeting in Indian strains of Xanthomonas oryzae pv. oryzae.Archives of microbiology · 2026Article
- The Rice-Xoc Arms Race: Molecular Mechanisms and Genomic Strategies Against Bacterial Leaf Streak.Rice (New York, N.Y.) · 2026Review
- Adaptative and ancient co-evolution of integrons withMicrobial genomics · 2025Article
- Population genomics and pathotypic evaluation of the bacterial leaf blight pathogen of rice reveals rapid evolutionary dynamics of a plant pathogen.Frontiers in cellular and infection microbiology · 2023Article
- TAL Effectors with Avirulence Activity in African Strains of Xanthomonas oryzae pv. oryzae.Rice (New York, N.Y.) · 2022Article
- Epigenetic features improve TALE target prediction.BMC genomics · 2021Article
- Comparative Genomic Analysis Uncovered Evolution of Pathogenicity Factors, Horizontal Gene Transfer Events, and Heavy Metal Resistance Traits in Citrus Canker BacteriumFrontiers in microbiology · 2021Article
- Development and comparative validation of genomic-driven PCR-based assays to detect Xanthomonas citri pv. citri in citrus plants.BMC microbiology · 2020Article
- Article
- Genome-scale metabolic reconstruction and in silico analysis of the rice leaf blight pathogen, Xanthomonas oryzae.Molecular plant pathology · 2020Article
- Genome-Wide Profiling and Phylogenetic Analysis of theInternational journal of molecular sciences · 2020Article
- Diagnostic kit for rice blight resistance.Nature biotechnology · 2019Article
- PrediTALE: A novel model learned from quantitative data allows for new perspectives on TALE targeting.PLoS computational biology · 2019Article
- Rice Galaxy: an open resource for plant science.GigaScience · 2019Article
- A Pathovar ofFrontiers in plant science · 2019Article
- Transcriptional Reprogramming of Rice Cells byFrontiers in plant science · 2019Article
- Functional analysis of African Xanthomonas oryzae pv. oryzae TALomes reveals a new susceptibility gene in bacterial leaf blight of rice.PLoS pathogens · 2018Article
- Functional and Genome Sequence-Driven Characterization ofFrontiers in microbiology · 2018Article
- An engineered promoter driving expression of a microbial avirulence gene confers recognition of TAL effectors and reduces growth of diverse Xanthomonas strains in citrus.Molecular plant pathology · 2017Article
Corrections and comments
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Authors and funding
7 authors at 3 institutions in 2 countries.
Funding
No grant is acknowledged in the PubMed record.
Abstract
The species Xanthomonas oryzae is comprised of two designated pathovars, both of which cause economically significant diseases of rice in Asia and Africa. Although X. oryzae is not considered endemic in the United States, an X. oryzae-like bacterium was isolated from U.S. rice and southern cutgrass in the late 1980s. The U.S. strains were weakly pathogenic and genetically distinct from characterized X. oryzae pathovars. In the current study, a draft genome sequence from two U.S. Xanthomonas strains revealed that the U.S. strains form a novel clade within the X. oryzae species, distinct from all strains known to cause significant yield loss. Comparative genome analysis revealed several putative gene clusters specific to the U.S. strains and supported previous reports that the U.S. strains lack transcriptional activator-like (TAL) effectors. In addition to phylogenetic and comparative analyses, the genome sequence was used for designing robust U.S. strain-specific primers, demonstrating the usefulness of a draft genome sequence in the rapid development of diagnostic tools.
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Registered trials
Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.