Evidence map›Paper›PMID 21515717›Full record

ArticleApplied and environmental microbiology2011

Employing site-specific recombination for conditional genetic analysis in Sinorhizobium meliloti.

Clarice L Harrison, Matthew B Crook, Gledi Peco, Sharon R Long, Joel S Griffitts

Abstract read
In one paragraph

Article in Applied and environmental microbiology, 2011. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

6 citing papers in PubMed.

  1. Article
  2. Review
  3. Highly Efficient CRISPR-Mediated Base Editing inFrontiers in microbiology · 2021
    Article
  4. Article
  5. Article
  6. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors.

Clarice L HarrisonDepartment of Microbiology and Molecular Biology, Brigham Young University, Provo, UT 84602, USA.
Matthew B Crook
Gledi Peco
Sharon R Long
Joel S Griffitts

Funding

Control of Symbiotic Gene Expression in Sinorhizobium melilotiR01GM093628 · NIGMS · STANFORD UNIVERSITY · PI LONG, SHARON R · 2010 to 2017
$7.0M
Modulation of two-component signaling in alphaproteobacteriaR15AI082504 · NIAID · BRIGHAM YOUNG UNIVERSITY · PI GRIFFITTS, JOEL S · 2009 to 2009
$225k
NIAID NIH HHS 1R15AI082504-01NIAID NIH HHS R15 AI082504NIGMS NIH HHS R01 GM093628
6 · The paper itself

Abstract

The ability to remove a genetic function from an organism with good temporal resolution is crucial for characterizing essential genes or genes that act in complex developmental programs. The rhizobium-legume symbiosis involves an elaborate two-organism interaction requiring multiple levels of signal exchange. As an important step toward probing rhizobium genetic functions with temporal resolution, we present the development of a conditional gene deletion system in Sinorhizobium meliloti that employs Cre/loxP site-specific recombination. This system enables chemically inducible and irreversible gene deletion or gene upregulation. Recombinase-mediated excision events can be positively or negatively selected or monitored by a colorimetric assay. The system may be adaptable to various bacterial species, in which recombinase activity may be placed under the control of diverse user-defined promoters. This system also shows promise for uses in promoter trapping and biosensing applications.

Indexed as

AcetoinGene Expression Regulation, BacterialGene Knockout TechniquesGenetics, MicrobialPromoter Regions, GeneticRecombination, GeneticSinorhizobium melilotiTaurineAcetoinTaurine

Identifiers

PMID21515717
PMCPMC3131647

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.