Evidence map›Paper›PMID 21515672›Full record

ArticleThe Journal of biological chemistry2011

A257T linker region mutant of T7 helicase-primase protein is defective in DNA loading and rescued by T7 DNA polymerase.

Gayatri Patel, Daniel S Johnson, Bo Sun, Manjula Pandey, Xiong Yu, Edward H Egelman, Michelle D Wang, Smita S Patel

Open access · hybridAbstract read
In one paragraph

Article in The Journal of biological chemistry, 2011. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 12 papers.

0numbers the graph read from it
0cells of the map it votes in
12citing papers in PubMed
0.7field-weighted citation impact, top 30% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

12 citing papers in PubMed, 18 citations in OpenAlex.

  1. Structural insight and characterization of human Twinkle helicase in mitochondrial disease.Proceedings of the National Academy of Sciences of the United States of America · 2022
    Article
  2. DNA replication machinery: Insights fromComputational and structural biotechnology journal · 2021
    Review
  3. Article
  4. Article
  5. DNA looping mediates nucleosome transfer.Nature communications · 2016
    Article
  6. Article
  7. Article
  8. Structure, function and evolution of the animal mitochondrial replicative DNA helicase.Critical reviews in biochemistry and molecular biology · 2016
    Review
  9. Article
  10. Article
  11. Article
  12. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 3 institutions in 1 country.

Gayatri PatelDepartment of Biochemistry, Robert Wood Johnson Medical School, University of Medicine and Dentistry of New Jersey, Piscataway, New Jersey 08854, USA.
Daniel S Johnson
Bo Sun
Manjula Pandey
Xiong Yu
Edward H Egelman
Michelle D Wang
Smita S Patel
Cornell University · USUniversity of Virginia · USHoward Hughes Medical Institute · US

Funding

STRUCTURAL STUDIES OF RECA FILAMENTSR01GM035269 · NIGMS · YALE UNIVERSITY · PI EGELMAN, EDWARD H. · 1986 to 2016
$5.2M
MECHANISTIC STUDIES OF HEXAMERIC HELICASESR01GM055310 · NIGMS · UNIV OF MED/DENT NJ-R W JOHNSON MED SCH · PI PATEL, SMITA S · 1997 to 2015
$4.6M
STUDIES OF NUCLEOSOME STABILITY AND TRANSCRIPTIONR01GM059849 · NIGMS · CORNELL UNIVERSITY ITHACA · PI WANG, MICHELLE D. · 1999 to 2008
$2.2M
NIGMS NIH HHS GM035269NIGMS NIH HHS GM059849NIGMS NIH HHS GM55310NIGMS NIH HHS R01 GM035269NIGMS NIH HHS R01 GM055310NIGMS NIH HHS R01 GM059849
6 · The paper itself

Abstract

The helicase and primase activities of the hexameric ring-shaped T7 gp4 protein reside in two separate domains connected by a linker region. This linker region is part of the subunit interface between monomers, and point mutations in this region have deleterious effects on the helicase functions. One such linker region mutant, A257T, is analogous to the A359T mutant of the homologous human mitochondrial DNA helicase Twinkle, which is linked to diseases such as progressive external opthalmoplegia. Electron microscopy studies show that A257T gp4 is normal in forming rings with dTTP, but the rings do not assemble efficiently on the DNA. Therefore, A257T, unlike the WT gp4, does not preassemble on the unwinding DNA substrate with dTTP without Mg(II), and its DNA unwinding activity in ensemble assays is slow and limited by the DNA loading rate. Single molecule assays measured a 45 times slower rate of A257T loading on DNA compared with WT gp4. Interestingly, once loaded, A257T has almost WT-like translocation and DNA unwinding activities. Strikingly, A257T preassembles stably on the DNA in the presence of T7 DNA polymerase, which restores the ensemble unwinding activity of A257T to ∼75% of WT, and the rescue does not require DNA synthesis. The DNA loading rate of A257T, however, remains slow even in the presence of the polymerase, which explains why A257T does not support T7 phage growth. Similar types of defects in the related human mitochondrial DNA helicase may be responsible for inefficient DNA replication leading to the disease states.

Indexed as

Amino Acid SubstitutionBacteriophage T7DNA-Directed DNA PolymeraseDNA HelicasesDNA PrimaseDNA ReplicationDNA, ViralHumansMitochondrial ProteinsMutation, MissenseOphthalmoplegia, Chronic Progressive ExternalSequence Homology, Amino AcidThymine Nucleotidesbacteriophage T7 induced DNA polymeraseDNA-Directed DNA PolymeraseDNA HelicasesDNA PrimaseDNA, ViralMitochondrial Proteinsthymidine 5'-triphosphateThymine NucleotidesTWNK protein, human

Identifiers

PMID21515672
PMCPMC3121467
OpenAlexW2151511690

What OpenQuestion holds

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Read underepoch 390

Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.