Evidence map›Paper›PMID 21513801›Full record

ArticleMethods (San Diego, Calif.)2011

Enzymatic assays for assessing histone deubiquitylation activity.

Robyn T Sussman, Xiao-Yong Zhang, Steven B McMahon

Abstract read
In one paragraph

Article in Methods (San Diego, Calif.), 2011. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed.

  1. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors.

Robyn T SussmanDepartment of Cancer Biology, Thomas Jefferson University, Philadelphia, PA 19107, USA.
Xiao-Yong Zhang
Steven B McMahon

Funding

Functional analysis of transcriptional program regulated by the c-MYC oncoproteinR01CA090465 · NCI · WISTAR INSTITUTE · PI MCMAHON, STEVEN B. · 2002 to 2012
$2.9M
Role of TRRAP in the p53-Mediated Transcription of mdm2R01CA098172 · NCI · WISTAR INSTITUTE · PI MCMAHON, STEVEN B · 2003 to 2007
$1.4M
Function of a novel, sirtuin-regulated acetylation site on p53.R21CA152786 · NCI · THOMAS JEFFERSON UNIVERSITY · PI MCMAHON, STEVEN B. · 2010 to 2011
$364k
NCI NIH HHS CA090465NCI NIH HHS CA098172NCI NIH HHS CA152786NCI NIH HHS R01 CA090465NCI NIH HHS R01 CA098172NCI NIH HHS R21 CA152786
6 · The paper itself

Abstract

While the post-translational modification of histones by the addition of ubiquitin was discovered decades ago, it has only recently been appreciated that the dynamic regulation of histone ubiquitylation patterns is an important mechanism for controlling a variety of biological processes. The processes include transcription, the recognition and repair of genomic damage and DNA replication, among others. Enzymes that catalyze the addition of ubiquitin to histones, such as the polycomb family, have been well-studied. In contrast, the enzymes that remove ubiquitin from histones are less well understood. The assay strategies described here provide a platform for the thorough in vitro and in vivo analysis of histone deubiquitylation. In some cases, these poorly characterized enzymes are likely to provide new opportunities for therapeutic targeting and a detailed understanding of their biochemical and biological activities is a prerequisite to these clinical advances.

Indexed as

AnimalsBaculoviridaeCell LineChromatography, GelEndopeptidasesEnzyme AssaysFractional PrecipitationGenetic VectorsHistonesHumansNucleosomesProtein RefoldingRecombinant ProteinsUbiquitinated ProteinsYeastsEndopeptidasesHistonesNucleosomesRecombinant ProteinsUbiquitinated Proteins

Identifiers

PMID21513801
PMCPMC3118937

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.