Evidence map›Paper›PMID 21512513›Full record

ArticleObesity (Silver Spring, Md.)2011

Replication and extension of association between common genetic variants in SIM1 and human adiposity.

Michael M Swarbrick, Daniel S Evans, Maria I Valle, Hélène Favre, Shi-Hsuan Wu, Omer T Njajou, Rongling Li, Joseph M Zmuda, Iva Miljkovic, Tamara B Harris and 3 more

Abstract read
In one paragraph

Article in Obesity (Silver Spring, Md.), 2011. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 14 papers, 2 of them syntheses that pooled it.

0numbers the graph read from it
0cells of the map it votes in
14citing papers in PubMed, 2 pooled it
1.0field-weighted citation impact, top 24% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

14 citing papers in PubMed, 2 syntheses or guidelines pooled it, 23 citations in OpenAlex.

  1. Pooled it
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  13. Role of oxytocin signaling in the regulation of body weight.Reviews in endocrine & metabolic disorders · 2013
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

13 authors at 5 institutions in 2 countries.

Michael M Swarbrick *Diabetes Center and Department of Medicine, University of California, San Francisco, California, USA.
Daniel S Evans *Diabetes Center and Department of Medicine, University of California, San Francisco, California, USA.
Maria I ValleDiabetes Center and Department of Medicine, University of California, San Francisco, California, USA.
Hélène FavreDiabetes Center and Department of Medicine, University of California, San Francisco, California, USA.
Shi-Hsuan WuDiabetes Center and Department of Medicine, University of California, San Francisco, California, USA.
Omer T NjajouDiabetes Center and Department of Medicine, University of California, San Francisco, California, USA.
Rongling LiDepartment of Preventive Medicine, University of Tennessee Health Science Center, Memphis, Tennessee, USA.
Joseph M ZmudaDepartment of Epidemiology, University of Pittsburgh, Pittsburgh, Pennsylvania, USA.
Iva MiljkovicDepartment of Epidemiology, University of Pittsburgh, Pittsburgh, Pennsylvania, USA.
Tamara B HarrisLaboratory of Epidemiology, Demography and Biometry, National Institute on Aging, Bethesda, Maryland, USA.
Pui-Yan KwokCardiovascular Research Institute, University of California, San Francisco, California, USA.
Christian VaisseDiabetes Center and Department of Medicine, University of California, San Francisco, California, USA.
Wen-Chi HsuehDiabetes Center and Department of Medicine, University of California, San Francisco, California, USA.
University of California, San Francisco · USUniversity of Pittsburgh · USNational Institute on Aging · USUniversity of Tennessee Health Science Center · USUNSW Sydney · AU

Funding

ZD1839 FOR MALIGNANT ASTROCYTOMA OR GLIOBLASTOMA AND MENINGIOMAM01RR000079 · NCRR · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI KESSLER, DAVID A · 1985 to 2006
$26.0M
Research BaseP30DK063720 · NIDDK · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI MCMANUS, MICHAEL T · 2003 to 2019
$21.8M
DIABETES, ENDOCRINOLOGY &METABOLISM TRAINING PROGRAMT32DK007418 · NIDDK · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI EDWARD C HSIAO · 1986 to 2026
$14.3M
The Melanocortin-4 Receptor in Human ObesityR01DK060540 · NIDDK · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI CHRISTIAN VAISSE · 2002 to 2026
$7.5M
Genetic Epidemiology of Telomere Length in the AmishR01AG023692 · NIA · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI HSUEH, WEN-CHI · 2004 to 2008
$1.5M
Genetic analysis of AGES-Reykjavik Study and the Health ABCZIAAG006000 · NIA · NATIONAL INSTITUTE ON AGING · PI HARRIS, TAMARA · 2009 to 2017
$1.3M
DYNAMICS OF HEALTH .AGING . AND BODY COMPOSITION /Pittsburgh/-260962101N01AG062101 · NIA · UNIVERSITY OF PITTSBURGH AT PITTSBURGH · 1996 to 2004
$996k
DYNAMICS OF HEALTH . AGING . AND BODY COMPOSITION /Memphis/-26062103N01AG062103 · NIA · UNIVERSITY OF TENNESSEE HEALTH SCI CTR · 1996 to 2004
$793k
Diurnal Preference in Amish FamiliesK01AG022782 · NIA · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI HSUEH, WEN-CHI · 2003 to 2007
$730k
Epidemiology and Genetics of Skeletal Muscle CompositionK01DK083029 · NIDDK · UNIVERSITY OF PITTSBURGH AT PITTSBURGH · PI MILJKOVIC, IVA · 2008 to 2012
$640k
HEALTH ABC--COORDINATING UNIT /California/-260062106N01AG062106 · NIA · UNIVERSITY OF CALIFORNIA SAN FRANCISCO · 1996 to 2004
$109k
Intramural NIH HHSNCRR NIH HHS M01 RR000079NCRR NIH HHS M01 RR-00079NIA NIH HHS K01 AG022782NIA NIH HHS N01-AG-6-2101NIA NIH HHS N01-AG-6-2103NIA NIH HHS N01-AG-6-2106NIA NIH HHS R01 AG023692NIDDK NIH HHS K01 DK083029NIDDK NIH HHS P30 DK063720NIDDK NIH HHS P30 DK63720NIDDK NIH HHS R01 DK060540NIDDK NIH HHS R01 DK60540NIDDK NIH HHS T32 DK007418
6 · The paper itself

Abstract

Haplo-insufficiency of the bHLH (basic helix-loop-helix) transcription factor single-minded 1 (SIM1) causes severe obesity in mice and humans. We hypothesized that common genetic variations in/near SIM1 could exert more subtle effects on its function and associate with human adiposity. First, SIM1 coding regions were sequenced in severely obese subjects, and two common nonsynonymous single-nucleotide polymorphisms (nsSNPs) in complete linkage disequilibrium (LD) were identified: Pro352Thr (rs3734354) and Ala371Val (rs3734355). We next carried out a SNP association study of five adiposity traits (BMI, % body fat, abdominal visceral and subcutaneous fat, and leptin concentrations) in 1,699 whites and 1,173 blacks. TagSNPs covering SIM1 and nearby conserved regions, and the only common nsSNP in SIM1's binding partner aryl-hydrocarbon receptor nuclear translocator 2 (ARNT2) (Gly679Ser/rs4072568), were investigated. The effects of rs3734355/4 on SIM1 activity were tested using an in vitro reporter assay. We replicated previous observations that homozygosity for the 371Val allele was associated with higher BMI in white males (P = 0.003). Together with previous findings in white males (combined n = 3,479), BMI was increased by 1.10 kg/m(2) in 371Val homozygotes (95% confidence interval (CI): 0.25-1.95 kg/m(2), P = 0.01). In vitro, the 352Thr-371Val haplotype impaired SIM1 transcriptional activity by 22% (P < 0.0001). TagSNP analysis of SIM1 revealed two SNPs in the 3' region (rs9390322 and rs7746743) and another in intron 5 (rs3734353) to be significantly associated with various adiposity measures in ethnicity- and sex-specific manners after multiple testing correction. In white males, rs4072568 in ARNT2 was also associated with BMI (P = 9 × 10(-4)) and % body fat (P = 0.001). Our findings implicate heritable defects of the SIM1-ARNT2 axis in the predisposition to human obesity.

Indexed as

Body Mass IndexGenotypePolymorphism, Single NucleotideAdipose TissueAdiposityAllelesARNTL Transcription FactorsBasic Helix-Loop-Helix ProteinsBlack PeopleBody CompositionFemaleGenetic Association StudiesGenetic Predisposition to DiseaseHaploinsufficiencyHaplotypesHomozygoteARNTL Transcription FactorsBasic Helix-Loop-Helix ProteinsLeptinRepressor ProteinsSIM1 protein, human

Identifiers

PMID21512513
PMCPMC4646950
OpenAlexW2086149438

What OpenQuestion holds

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LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.