Evidence map›Paper›PMID 21510775›Full record

ArticleOphthalmic genetics2012

Lack of association between LOXL1 gene polymorphisms and primary open angle glaucoma in the Saudi Arabian population.

Khaled K Abu-Amero, Essam A Osman, Mohammad T Azad, R Rand Allingham, Michael A Hauser, Saleh A Al-Obeidan

Abstract read
In one paragraph

Article in Ophthalmic genetics, 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed, 1 pooled it
1.1field-weighted citation impact, top 22% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

7 citing papers in PubMed, 1 synthesis or guideline pooled it, 12 citations in OpenAlex.

  1. Pooled it
  2. Article
  3. Review
  4. An Updated Review on the Genetics of Primary Open Angle Glaucoma.International journal of molecular sciences · 2015
    Review
  5. Genetics of exfoliation syndrome and glaucoma.International ophthalmology clinics · 2014
    Review
  6. Article
  7. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 2 institutions in 2 countries.

Khaled K Abu-AmeroOphthalmic Genetics Laboratory, Department of Ophthalmology, College of Medicine, King Saud University, Riyadh, Saudi Arabia. abuamero@gmail.com
Essam A Osman
Mohammad T Azad
R Rand Allingham
Michael A Hauser
Saleh A Al-Obeidan
King Saud University · SADuke University · US

Funding

Admixture Mapping of Glaucoma Genes in African AmericansR01EY019126 · NEI · DUKE UNIVERSITY · PI HAUSER, MICHAEL A · 2008 to 2012
$3.2M
NEI NIH HHS R01 EY019126
6 · The paper itself

Abstract

purposeTo investigate whether major single nucleotide polymorphisms (SNPs) in the LOXL1 gene associated with pseudoexfoliation glaucoma are associated with primary open angle glaucoma (POAG) in the Saudi Arabian population.

methodsThe regions of the LOXL1 gene associated with pseudoexfoliation glaucoma, encompassing the three common SNPs, (rs1048661, rs3825942 and rs2165241), were sequenced in a Saudi Arabian dataset consisting of 96 POAG cases and 101 healthy controls.

resultsThe allele frequency of the G exfoliation risk allele for SNP rs1048661 in POAG cases and controls was 0.75 and 0.76 (p = 0.886), respectively and the allele frequency difference was not statistically significant (p = 0.866). There was no statistically significant difference in the genotypes between patients and controls (p = 0.261 and 0.156 for genotypes G/G and G/T respectively). As for SNP rs3825942, the frequency of the "G" allele in the POAG patients was comparable to that in the controls (p = 0.477) and there was no statistically significant difference in genotype G/G and A/G frequency in the study groups. As for SNP rs2165241, the "T" allele frequency in the POAG patients (0.46) was slightly higher than the frequency in controls (0.39), but this difference was not statistically significant (p = 0.176).

conclusionThe Saudi Arabian POAG population, similar to all other populations studied to date, demonstrates no association with SNPs associated with pseudoexfoliation glaucoma.

Indexed as

Polymorphism, Single NucleotideAgedAmino Acid OxidoreductasesExfoliation SyndromeFemaleGene FrequencyGenotypeGlaucoma, Open-AngleHumansIntraocular PressureMalePolymerase Chain ReactionSaudi ArabiaAmino Acid OxidoreductasesLOXL1 protein, human

Identifiers

PMID21510775
PMCPMC3716391
OpenAlexW2039351064

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.